EY735563

Overview
NameEY735563
Unique NameEY735563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12761 contig Csv1_Contig12761:270..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735563 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.039e-23
Identity = 69/238 (28.99%), Postives = 120/238 (50.42%), Query Frame = 2
Query:   80 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVKFDEEGKVXGVTSE-GETAKCKKVVCDPSYLPNKVRKVGXVCXGNRY 787
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y E+ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +  + G+    K  V + SYL          C G +Y
Sbjct:  237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSEN------TCSGVQY 461          
BLAST of EY735563 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 7.749e-23
Identity = 63/226 (27.88%), Postives = 116/226 (51.33%), Query Frame = 2
Query:   80 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVKFDEEGKVXGVTSE-GETAKCKKVVCDPSYLPNKV 751
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +  + G+    +  + + SY P  +
Sbjct:  225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENM 443          
BLAST of EY735563 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 65/224 (29.02%), Postives = 117/224 (52.23%), Query Frame = 2
Query:   80 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVKFDEEGKVXGVTSE-GETAKCKKVVCDPSYL 739
            R +N+D++ + + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   V  + G+    K  + + SYL
Sbjct:  222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL 436          
BLAST of EY735563 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 62/231 (26.84%), Postives = 103/231 (44.59%), Query Frame = 2
Query:   74 SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIA-KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVKFDEEGKVXGVTSEGETAKCKKVVCDPSYLPNKVRKV 760
            SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V ++   + +T         T  + +  K+ L+   +  +  ++ L  D   LN    + ++R++ Y  S   + G  P +   Y G GEL Q F R +AV G TY LN  E  V F+   KV       +    +KV+  P+  P   + V
Sbjct:  125 SSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNW---EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHV 346          
The following BLAST results are available for this feature:
BLAST of EY735563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAE1_MOUSE2.039e-2328.99Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN7.749e-2327.88Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT1.012e-2229.02Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST2.763e-1226.84Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-B08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735563 ID=EY735563; Name=EY735563; organism=Citrus sinensis; type=EST; length=850bp
CACGCGTCCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATG
AACAACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATG
ATCCCGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCA
TACTGATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCG
TCTATAATAAAGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCG
CTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTT
TTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGG
GAATGGACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGT
CTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAG
AGATGATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGA
AGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACCATACATT
TACCCTCTGTATGGCCTTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTAG
TGCTGTTTATGGTGGGACGTATATGTTGAATAAACCTGAGTGCAAGGTAA
AGTTTGATGAAGAAGGTAAAGTANTCGGTGTCACGTCAGAAGGGGAAACT
GCAAAGTGCAAGAAAGTTGTTTGTGATCCTTCCTATTTGCCCAACAAGGT
GAGGAAAGTTGGCANGGTTTGCTANGGCAATCGCTATTATGAGCCACCCA
ATCCCGAACACCAATGATTCCCATTCAGTGCAGGTTATCCTTCCGCAAAA
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