EY735562

Overview
NameEY735562
Unique NameEY735562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 426
            KR+ +EL  L        SA            TI G + + +    + +S+ FP  YP+  P V F T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  145 GPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 468
            GPS++P++GG++ V +  P +YP+K P + F  ++FHPNI+  +GS+CLD++ + WSP   +  +  + +  LL  PN  DPL  E A +   +   Y    R +  +YA
Sbjct:   38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 426
            KR+ +EL  L        SA            TI G   + +    + +S+ FP  YP+  P V F T  FHPN++S+G+ICLDILK++WS    +  +LLS+ SLL +PN + PL P  A +++   A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTA 161          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 426
            KR+ +EL  L        SA            TI G + + +    + +S+ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 426
            KR+ +EL  L        SA            TI G + + +    + +S+ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   67 ASKRINKELKDLQKDPPA-----SCSAATIMG------PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 471
            ASKR+ KEL DL K+ P      S   A ++       P   P+    F + I FP +YP KPP + F TK++HPNI+ +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   D   +   A  +T +Y +
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLLPDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGV 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   19 QTQTLRPQSLLRNSQMASKRINKELKDLQKDPPASCSAATIMG------------PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 447
            Q+   R  S ++       R++K++ +L    P SC  +   G            P +  +  G F+ S      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  E A + + +   +E   R
Sbjct:   16 QSNNGRGASTVKKQSAGELRLHKDISELNL--PKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 426
            KR+ +EL  L        SA            TI G + + +    + +S+ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   49 LRNSQMAS--KRINKELKDLQKDPPASCSAA------------TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 414
            +   QM S  K +  ELK LQ++P                    I GP ++ + GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    1 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   49 LRNSQMAS--KRINKELKDLQKDPPASCSAA------------TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 414
            +   QM S  K +  ELK LQ++P                    I GP ++ + GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    1 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
The following BLAST results are available for this feature:
BLAST of EY735562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2C_HUMAN7.690e-1737.21Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC8_SCHPO1.004e-1635.45Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBE2C_XENLA1.713e-1636.43Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MACFA1.713e-1636.43Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.713e-1636.43Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UB2L6_RAT1.713e-1633.33Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UB12L_ARATH1.713e-1630.97Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2C_MOUSE2.922e-1636.43Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UB2R2_RABIT4.985e-1632.89Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE4.985e-1632.89Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-B07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735562 ID=EY735562; Name=EY735562; organism=Citrus sinensis; type=EST; length=690bp
CCACGCGTCCGATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTT
GAGAAATTCCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACC
TACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGCAACAATTATGGGCCCA
TCAGACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCC
ACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTT
TCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAG
GAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTG
CTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTG
CTCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCC
TGGACTCAGAAGTATGCCATGGGTTAAGAGGGGCTANGCTGTATGCCCCT
GAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTT
GTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAA
AGGTTTTATGTGGGGGTTACTTTCAAATTTAGCATTGTTCTTCAATACTT
AAATTATAATTTACTGCAGAAAAAAAAAAAAAAAAAAAAA
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