EY735562

Overview
NameEY735562
Unique NameEY735562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12805 contig Csv1_Contig12805:7..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 471
            +RI KE + L  +P     A             I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 471
            +RI KE + L  +P     A             I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSA-----------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 471
            +RI KE + L  +P     A             I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSAAT-----------IMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 474
            +RI KE + L  +P    SA+            I+GP+ SP+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSAAT-----------IMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 474
            +RI KE + L  +P    SA+            I+GP+ SP+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.486e-31
Identity = 70/143 (48.95%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   73 KRINKELKDLQKDPPASCSAA-----------TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 468
            KRI KE + L  +P    SA             I GP DSPF GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   58 SQMASKRINKELKDLQKDPPASCSAATI-----------MGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EGL 486
            S   S+RI KEL D+Q+D  A     TI            GP  +P+ GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA    G+
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 67/149 (44.97%), Postives = 90/149 (60.40%), Query Frame = 1
Query:   58 SQMASKRINKELKDLQKDPPASCSAA-----------TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 456
            S  A KR+ ++ K LQ+DPPA  S A            I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  ++ +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   70 SKRINKELKDLQKDPPASCSA------------ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 468
            +KRI KE++ ++ DP A  +              T +GP  +P+ GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA  WT+ YA
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of EY735562 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   58 SQMASKRINKELKDLQKDPPASCSAA-----------TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR-----SWT 456
            S  A KR+ ++ K LQ+DPPA  S A            I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   + +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of EY735562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2N_HUMAN4.962e-3247.92Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN4.962e-3247.92Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT1.444e-3147.22Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC36_ARATH3.216e-3147.59Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH3.216e-3147.59Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DICDI5.486e-3148.95Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_SCHPO2.085e-3043.23Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_WHEAT6.065e-3044.97Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_YEAST6.065e-3044.52Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_ARATH6.065e-3045.64Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-B07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735562 ID=EY735562; Name=EY735562; organism=Citrus sinensis; type=EST; length=690bp
CCACGCGTCCGATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTT
GAGAAATTCCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACC
TACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGCAACAATTATGGGCCCA
TCAGACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCC
ACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTT
TCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAG
GAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTG
CTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTG
CTCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCC
TGGACTCAGAAGTATGCCATGGGTTAAGAGGGGCTANGCTGTATGCCCCT
GAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTT
GTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAA
AGGTTTTATGTGGGGGTTACTTTCAAATTTAGCATTGTTCTTCAATACTT
AAATTATAATTTACTGCAGAAAAAAAAAAAAAAAAAAAAA
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