EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.987e-55
Identity = 108/161 (67.08%), Postives = 125/161 (77.64%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS  V T    S AQA+MVAPFTGLKSS+A P T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 3.900e-55
Identity = 105/161 (65.22%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSMISS T+AT N +S AQA+MVAPFTGLKS+SA P T+K NNDITS+ASNGGRV CM+VWPP G KKFETLSYLP L+   L KE+ YLLRS WIPCLEFELE+G+V R++   P YYDGRY TM KLPM+GCTD+  VL+++ +   E    F+R++
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRII 161          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.900e-55
Identity = 105/161 (65.22%), Postives = 128/161 (79.50%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+V REHH SPGYYDGRY TM KLPM+GCTDAT VL +V +        +VR++
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 5.094e-55
Identity = 107/161 (66.46%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS+ISS  VAT  R+++ QASMVAPFTGLKSS+  P TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        +VR++
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.653e-55
Identity = 107/161 (66.46%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM SST V T    S AQA+MVAPFTGLKSS++ P T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.689e-55
Identity = 105/162 (64.81%), Postives = 130/162 (80.25%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNN-DITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS   AT  R+++AQASMVAPFTGLKS+++ P TKK NN DITS+ASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E+G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        +VR++
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRII 160          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.689e-55
Identity = 105/161 (65.22%), Postives = 126/161 (78.26%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS T+     AS AQA+MVAPF GLKSS+A PAT+K NNDITSI SNGGRV+CM+VWPP G KKFETLSYLP L+D  L KE+ YL+R+ WIPC+EFELE G+V REH  SPGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.135e-54
Identity = 108/161 (67.08%), Postives = 121/161 (75.16%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSMISS  V T NRA    A  VAPFTGLKS +  P T+KTNNDI SIASNGGRV CM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+V REHH SPGYYDGRY TM KLPM+GCTDA+ VLK++ +        F+R++
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.482e-54
Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS  V T    S AQA+MVAPFTGLKSS+A P T+K NNDITSIASNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.936e-54
Identity = 105/161 (65.22%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+V RE+H SPGYYDGRY TM KLPM+GCTDAT VL +V +        +VR++
Sbjct:    1 MASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRII 159          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS3B_ARATH2.987e-5567.08Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS_GOSHI3.900e-5565.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL3.900e-5565.22Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS2A_SOLLC5.094e-5566.46Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2B_ARATH6.653e-5566.46Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_SOLLC8.689e-5564.81Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1A_ARATH8.689e-5565.22Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_GLYTA1.135e-5467.08Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA1.482e-5465.84Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS3B_SOLLC1.936e-5465.22Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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