EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.980e-18
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL D+          ++R+V
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLV 151          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.449e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTDA+ VL ++          ++R+V
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLV 150          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.892e-17
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 168          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.892e-17
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 177          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  309 SYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   ++ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 121          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.965e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  396 ELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            ELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRII 58          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS7_ACECL4.980e-1843.52Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_ACEAT1.449e-1742.59Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ACEAT1.892e-1736.76Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT1.892e-1736.76Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ACECL6.300e-1334.71Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_SINAL6.965e-1255.17Ribulose bisphosphate carboxylase small chain (Fra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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