EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.463e-51
Identity = 102/168 (60.71%), Postives = 125/168 (74.40%), Query Frame = 3
Query:   87 MASSMISS--TTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            MASSM+S+  T VA A  +  AQA+MVAPF GLKS ++ P T+K+N DITSIASNGGRV CM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +V RE+H SPGY DGRY TM KLPMYGCTD   VL +V +        F+R++ ++++
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNK 167          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.829e-51
Identity = 99/161 (61.49%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS    ++VATA RA+ AQASMVAPF GLKS+SA P T+K    ++++ SNGGRV CMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRY TM KLPM+GCTDA  V+K+  +   E    F+R++
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVI 160          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.829e-51
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:   99 MISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            +I S+  A A   + AQASM+APFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP   KK+ETLSYLP LS+E LL+E+ YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        ++R++
Sbjct:    4 LIMSSAAAVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRII 160          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.612e-51
Identity = 104/182 (57.14%), Postives = 131/182 (71.98%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPAS 632
            MAS M   +  A   R + AQASMVAPFTGLKS SA P TKK+N DITSIASNGGRV CM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+V REH  +PGYYDGRY TM KLPM+GCTD + V+ ++ +        F R++ +++   + +    +A +PAS
Sbjct:    1 MASMM---SNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDN-VRQVQCISFIAYKPAS 177          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.942e-51
Identity = 94/154 (61.04%), Postives = 121/154 (78.57%), Query Frame = 3
Query:  108 STTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            S++VAT +R + AQA+MVAPFTGLKS++A P TKK N D +++ SNGGRV CMKVWPP GLKK+ETLSYLPPL++  L KE+ YLLR  W+PCLEFELE G+V RE+  SPGYYDGRY TM KLPM+GCTD+  V+K++ +   E    ++R++
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.298e-50
Identity = 99/166 (59.64%), Postives = 126/166 (75.90%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            MASSM++ST  A   R   AQ +MVAPF GL+SS A PAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+V RE+H SPGYYDGRY TM KLPM+GCTDA+ V+ +V +        FVR++ ++++
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.215e-50
Identity = 100/166 (60.24%), Postives = 124/166 (74.70%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            MASS++S+   A    AS AQA+MVAPF GLKS ++ P T+K+N DITSIASNGGRV CM+VWPP G KKFETLSYLPPLSD  LL ++ YLL +GWIPC+EFELE  +V RE+H SPGY DGRY TM KLPMYGCTD   VL +V +        F+R++ ++++
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNK 164          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.893e-50
Identity = 95/154 (61.69%), Postives = 122/154 (79.22%), Query Frame = 3
Query:  108 STTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            S+TVAT +RA+ AQA+MVAPFTGLKS++A PATKK N D +++ SNGGRV CMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+V RE+  SPGYYDGRY TM KLPM+GCTD+  V+K++ +   E    ++R++
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.778e-50
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS    ++VATA   + AQASMVAPF GLKS+SA P T+KT   ++++ SNGGRV CMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRY TM KLPM+GCTDA  V+K+  +   E    F+R++
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVI 160          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.444e-50
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS    ++VATA  A+ AQASMVAPF GLKS+SA P T+KT   ++++ SNGGRV CMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRY TM KLPM+GCT A  V+K+  +   E    F+R++
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVI 160          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS2_AMAHP4.463e-5160.71Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_FRIAG5.829e-5161.49Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY5.829e-5159.87Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS2_MESCR7.612e-5157.14Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN9.942e-5161.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.298e-5059.64Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_AMAHP2.215e-5060.24Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_FLAPR2.893e-5061.69Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_FRIAG3.778e-5060.87Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG6.444e-5060.87Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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