EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.714e-40
Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  144 AQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            + A+ VAPF GLKS++  P ++++N       SNGGR+ CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G++ REH++SPGYYDGRY TM KLPM+GC   T V+ +V +V  E    + R++
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRII 148          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.652e-38
Identity = 74/127 (58.27%), Postives = 98/127 (77.17%), Query Frame = 3
Query:  144 AQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDV 524
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR+ CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF  + G+V RE+  SP YYDGRY TM KLPM+GC DAT V K++
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKEL 133          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.808e-37
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  144 AQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDV 524
            + A+  APF GLKS+++ P  +++   +  + SNGGR+ CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF  E G+V RE+  SP YYDGRY TM KLPM+GCTDA+ V K++
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKEL 132          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.668e-37
Identity = 76/152 (50.00%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  126 ANRASLAQASMVAPFTGLKSSSACPATKKTNNDITS----IASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            A  A    A++V+ FTGLKS++  P++ K +N          SNGGRV CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRY  M KLPM+GCT+A+ V+ +V +        F+R++
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVI 152          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.917e-36
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  228 TSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            T I SNG RV CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+V  EH+ SP YYDGRY TM KLPM+G TD   V+K+V +V       FVR++
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVI 115          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.856e-35
Identity = 81/169 (47.93%), Postives = 113/169 (66.86%), Query Frame = 3
Query:   87 MASSMIS-STTVATANRASLAQ---ASMVAPFTGLKSSSACPATKKTNNDITS----IASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS+++ S+T A A  A+ ++   +++V+ FTGLKS +  P++K  +N          SNG RV CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R +  SPGYYDGRY  M KLPM+GCT+A+ VL +V +        F+R++
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVI 168          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.493e-30
Identity = 65/144 (45.14%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   93 SSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDV 524
            +S+++S  V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE    PGYYDGRY TM KLPM+GCTD+  VL+++
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREI 144          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.407e-30
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPA 629
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWIP LEFE++ G+V REH  SPGYYDGRY TM KLPM+G TD   V+ +V +V       FVR + + ++  E +    +A +PA
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGF-NDKREVQCISFIAYKPA 121          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.370e-25
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  309 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G++ REH+ SPGYYDGRY TM KLPM+GCTDAT V+ +V +V  E    +VR++
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRII 86          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-20
Identity = 64/166 (38.55%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  105 SSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            SS + A A  A     S V P   LK     PA K       +  +   + + M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E  I  G     YYD RY TM KLPM+GC D   VL+++          +VR+V ++++
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVK------AAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ 158          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS_AEGTA2.714e-4053.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE9.652e-3858.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY2.808e-3756.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH3.668e-3750.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA6.917e-3663.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA5.856e-3547.93Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA1.493e-3045.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL7.407e-3054.92Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS3_WHEAT9.370e-2559.77Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE1.072e-2038.55Ribulose bisphosphate carboxylase small chain 2, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
back to top