EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 63/166 (37.95%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  105 SSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            SS + A A  A     S V P   LK     PA K       +  +   + + M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E  I  G     YYD RY TM KLPM+GC D   VL+++          +VR+V ++++
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVK------AAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ 158          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 241          

HSP 2 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 385          

HSP 3 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 672          

HSP 4 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 815          

HSP 5 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 960          

HSP 6 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 1103          

HSP 7 Score: 97.4413 bits (241), Expect = 1.185e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD RY TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 1247          

HSP 8 Score: 95.5153 bits (236), Expect = 4.504e-19
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHI-----SPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRM 566
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++ +     + GYYD  Y TM KLPM+GCTDA+ VL+++ +        +VR+
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRL 528          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  267 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            KVW P   K++ET SYLPPL+++ + +++ Y++ +GW PCLEF       +      R   +S GYYD RY TM KLPM+GCTD + VL++V          ++R+V
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLV 136          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  189 SACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++    N     ++R+V ++    + + S  +   P S   Y  P
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 177          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.003e-18
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  180 KSSSACPATKKTNNDITSIASNGGRVHC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            K  +  P   +   +    ASN     C  M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:   14 KEVAKTPNFPRATKNNKGFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 178          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.311e-18
Identity = 58/166 (34.94%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  174 GLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 177          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.920e-18
Identity = 60/195 (30.77%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            MA++M+S T +++   +       V+   G  ++SA    ++                 M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I+ G     Y D RY TM KLPM+GCTD + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:    1 MAATMMSKTIISSKQCSKPIAPPKVSINKGFVNTSAAIKNRE-----------------MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 177          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.920e-18
Identity = 55/152 (36.18%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  135 ASLAQASMVAPFTGLKSSSACPATKKTNNDITS-IASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++          ++R+V
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV 152          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.813e-18
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  240 SNG--GRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE-LEKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            SNG   +   M VW P   K FET SYLPPL+D+ + K++ Y+LR+ W PCLEF   ++ +V  ++ +  G     Y D RY TM KLPM+GC D + VL ++          ++R+V ++    + + S  +   P S   Y  P
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDAN-RQVQISGFLVHRPESATDYRLP 170          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.813e-18
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  264 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVCREHHISPG-----YYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPASRRRYHAP 653
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+ I  G     Y D RY TM KLPM+GCTD + VL ++    N     ++R+V ++    + + S  +   P S   Y  P
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDAN-RQVQISGFLVHRPPSATDYRLP 178          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS1_CHLRE1.829e-2037.95Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_EUGGR1.185e-1943.93Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO3.449e-1941.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_ACEAT7.683e-1934.78Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACECL1.003e-1834.34Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL1.311e-1834.94Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_ACECL2.920e-1830.77Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL2.920e-1836.18Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_BATOE3.813e-1835.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_ACEAT3.813e-1837.50Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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