EY756579

Overview
NameEY756579
Unique NameEY756579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 39/136 (28.68%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  221 RSRFGIIPQEPVLFEGTVRSNVDPIGQY--SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVV 622
            R +  ++ Q   LF  T+ +N+   G++  S E+I  + +     + +   PD  D+ V ++G   S GQRQ + + R +LK + +L +D AT+++DS+++  IQ  + +     T + IAHR+ T+    ++IV+
Sbjct:  415 RKQMSLVSQNVTLFNDTLANNI-AYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVL 549          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 39/136 (28.68%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  221 RSRFGIIPQEPVLFEGTVRSNVDPIGQY--SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVV 622
            R +  ++ Q   LF  T+ +N+   G++  S E+I  + +     + +   PD  D+ V ++G   S GQRQ + + R +LK + +L +D AT+++DS+++  IQ  + +     T + IAHR+ T+    ++IV+
Sbjct:  415 RKQISLVSQNVTLFNDTLANNI-AYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVL 549          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPL (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Lens) GN=msbA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 39/136 (28.68%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  221 RSRFGIIPQEPVLFEGTVRSNVDPIGQY--SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVV 622
            R +  ++ Q   LF  T+ +N+   G++  S E+I  + +     + +   PD  D+ V ++G   S GQRQ + + R +LK + +L +D AT+++DS+++  IQ  + +     T + IAHR+ T+    ++IV+
Sbjct:  415 RKQMSLVSQNVTLFNDTLANNI-AYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMNGRTTLIIAHRLSTIKHAHKIIVM 549          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: TAP1_RAT (Antigen peptide transporter 1 OS=Rattus norvegicus GN=Tap1 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 4.486e-11
Identity = 36/120 (30.00%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  239 IPQEPVLFEGTVRSNV--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIRE--EFAACTIISIAHRI 586
            + QEP+LF  + R N+        + EEI          D ++  P   D+ V ++G+  S GQRQ + L R +++  RLL +D AT+++D+     +QR++ E  E+A+ T++ I  ++
Sbjct:  561 VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDDATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 680          

HSP 2 Score: 30.0314 bits (66), Expect = 4.486e-11
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 1
Query:   49 VLKGITLSILGGEKIGVVGRTGSGKSTL 132
            VL+G+T ++  G+   +VG  GSGKST+
Sbjct:  497 VLQGLTFTLYPGKVTALVGPNGSGKSTV 524          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: NDVA_RHIRD (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium radiobacter GN=ndvA PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.513e-11
Identity = 36/137 (26.28%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  221 RSRFGIIPQEPVLFEGTVRSNVDPIGQYS--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVD 625
            R+    + Q+  L   ++R N+  +G+ +  D E+ ++       D + ++ +   + V + G+  S G+RQ + + R +LK++ +L +D AT+++D +T+A ++  +       T   IAHR+ TV D D V+ +D
Sbjct:  408 RNSIATVFQDAGLLNRSIRENIR-LGRETATDAEVVEAAAAAAATDFIDSRINGYLTQVGERGNRLSGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLD 543          

HSP 2 Score: 29.261 bits (64), Expect = 4.513e-11
Identity = 12/33 (36.36%), Postives = 21/33 (63.64%), Query Frame = 1
Query:   34 SNTPLVLKGITLSILGGEKIGVVGRTGSGKSTL 132
            +NT   +  ++ +   GE + +VG TG+GK+TL
Sbjct:  345 ANTKQGVHDVSFTAKAGETVAIVGPTGAGKTTL 377          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: NDVA_AGRT5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndvA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.513e-11
Identity = 36/137 (26.28%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  221 RSRFGIIPQEPVLFEGTVRSNVDPIGQYS--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVD 625
            R+    + Q+  L   ++R N+  +G+ +  D E+ ++       D + ++ +   + V + G+  S G+RQ + + R +LK++ +L +D AT+++D +T+A ++  +       T   IAHR+ TV D D V+ +D
Sbjct:  408 RNSIATVFQDAGLLNRSIRENIR-LGRETATDAEVVEAAAAAAATDFIDSRINGYLTQVGERGNRLSGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLD 543          

HSP 2 Score: 29.261 bits (64), Expect = 4.513e-11
Identity = 12/33 (36.36%), Postives = 21/33 (63.64%), Query Frame = 1
Query:   34 SNTPLVLKGITLSILGGEKIGVVGRTGSGKSTL 132
            +NT   +  ++ +   GE + +VG TG+GK+TL
Sbjct:  345 ANTKQGVHDVSFTAKAGETVAIVGPTGAGKTTL 377          
BLAST of EY756579 vs. ExPASy Swiss-Prot
Match: NDVA_RHIL3 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ndvA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  305 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDXATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVD 625
            S+EE+ ++ E     D +  + D+ D+ V + G+  S G+RQ + + R +LK + +L +D AT+++D +T+A ++  I       T   IAHR+ TV + D V+ +D
Sbjct:  437 SEEEMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLD 543          
The following BLAST results are available for this feature:
BLAST of EY756579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 387
Match NameE-valueIdentityDescription
MSBA_LEGPH3.182e-1128.68Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPA3.182e-1128.68Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPL4.156e-1128.68Lipid A export ATP-binding/permease protein msbA O... [more]
TAP1_RAT4.486e-1130.00Antigen peptide transporter 1 OS=Rattus norvegicus... [more]
NDVA_RHIRD4.513e-1126.28Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_AGRT54.513e-1126.28Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHIL39.260e-1131.78Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756579 ID=EY756579; Name=EY756579; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGAGACTTGCATGTCAGATATCGCTCCAACACTCCTCTGGT
TCTCAAAGGTATTACACTCAGCATTCTCGGGGGAGAGAAGATTGGTGTAG
TTGGGCGTACAGGAAGTGGGAAGTCAACTTTATTCAGGTTTTCTTTAGGC
TGGTGGAGCCTTCAGGAGGGAGATCATTATTGATGGAATCGACATTTCAT
TGTTGGGGCTTCATGACCTAAGGTCTCGCTTTGGGATCATTCCTCAAGAA
CCTGTCCTTTTTGAAGGAACTGTGAGAAGCAATGTTGATCCAATTGGTCA
GTATTCAGATGAAGAAATCTGGAAGAGCCTCGAGCGATGTCAACTTAAAG
ATGTGGTAGCTGCAAAGCCTGATAAACTCGATTCTTTAGTGGCCGATAGT
GGTGACAACTGGAGCGTGGGACAAAGGCAGCTTCTTTGTCTGGGAAGGGT
TATGCTAAAGCACAGCCGGCTCTTGTTTATGGATGANGCGACGGCTTCTG
TTGATTCACAAACTGATGCTGAAATTCAAAGGATCATTCGAGAGGAGTTT
GCTGCCTGTACAATTATCAGCATTGCTCACAGGATACCCACAGTCATGGA
TTGTGATAGAGTTATAGTTGTTGATGCANGATGGGGCGAAGAATTTTGGC
AGCCATTCAGGTTGCTTTGAGAGCCATCACTCTTTGNACCATGGGTGCAA
GAGTATGCCCACCGATCGGCCAGACTGGAGGAACAATCCTTTGCCCTTAA
TGTTGGTTGAAAGAAGTTTCTGGGATGGAATGCCTATGAGTTTAAAAACC
CCTTGGGCTGCCATGAAAAATCCTTCTCCCCCTTCAAATTGCCCCAAAAA
ATTCTTCGAAAAAGGCCTGGAAG
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