EY756387

Overview
NameEY756387
Unique NameEY756387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:  255 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            VSRS++AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+ + TIA GGV+P+IH  L+ K +K
Sbjct:   15 VSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTK 121
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 575
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGHYAERIGAGAPV-YLAAVMEYLGAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 572
            +RSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 572
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN ++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756387 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  258 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 575
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
The following BLAST results are available for this feature:
BLAST of EY756387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_CHLRE2.584e-2458.33Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2AO_CHITH2.584e-2457.94Histone H2A, orphon OS=Chironomus thummi thummi PE... [more]
H2AE_PSAMI2.584e-2458.49Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A3_CHICK2.584e-2460.38Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]
H2A1_MOUSE2.584e-2458.88Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1K_MOUSE2.584e-2458.88Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1H_MOUSE2.584e-2458.88Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE2.584e-2458.88Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]
H2A1E_RAT2.584e-2458.88Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=... [more]
H2A1B_HUMAN2.584e-2458.88Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756387 ID=EY756387; Name=EY756387; organism=Citrus sinensis; type=EST; length=752bp
CCACGCGTCCGCTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCT
CAAACGCTCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCAT
CTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGA
AGCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTG
ATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAA
ACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGG
TCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCA
ACAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGT
GTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTA
CTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACT
CTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCACAA
GTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCT
CTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATG
AGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTTCTCATCC
TCATTTCTGCAGCGACGAATATGGTGCTTGTTTTTTCCCAAAAAAAAAAA
AG
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