EY756379

Overview
NameEY756379
Unique NameEY756379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   40 VYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            +YG+P  I   +L  +TYL H   H  LP Y   EW +LRG L+TVDRDYG +  + H+I  THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  241 LYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDI-GTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 GLAWLICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            G   L+ +YG+P L    +L L+TYL H      LP Y   EW +LRG L+T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  301 GPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   31 LICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            ++ +YG+P  I   +L  +TYL H      LP Y   EW +LRG L+T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  301 MLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   31 LICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            ++ +YG+P  I   +L  +TYL H      LP Y   EW +LRG L+T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  294 MLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   40 VYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            VYGVP +I   +L  +TYL H      LP Y   EW +LRG L+T+DRDYG+ N + H+I  THV HHLF  +PHYH ++AT A K +LG YY+
Sbjct:  239 VYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   40 VYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            VYGVP +I   +L  +TYL H      LP Y   EW +LRG L+T+DRDYG+ N + H+I  THV HHLF  +PHYH ++AT A K +LG YY+
Sbjct:  242 VYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   19 GLAWLICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            G   ++ +YG+P  I   +L  +TYL H      LP Y    W +LRG L+T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT A KP++G+YY+
Sbjct:  311 GPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   31 LICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            ++ +Y +P  I   +L  +TYL H      LP Y   EW +LRG L+T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  259 MLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354          
The following BLAST results are available for this feature:
BLAST of EY756379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_SOYBN1.001e-2152.13Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SESIN1.001e-2150.50Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_ARATH1.308e-2149.48Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH2.231e-2149.48Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3E_BRANA3.806e-2151.06Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH3.806e-2151.06Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO1.446e-2046.53Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_BRANA1.446e-2048.45Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756379 ID=EY756379; Name=EY756379; organism=Citrus sinensis; type=EST; length=678bp
CCACGCGTCCGGGCAAAAGGACTGGCCTGGCTTATATGCGTGTATGGGGT
ACCGCTACTCATTGTGAATGGCTTTCTTGTACTGATCACATACTTGCAGC
ACACGCATCCTGCACTGCCGCACTACAACTCATCCGAATGGGACTGGCTG
AGGGGGGCTCTCTCGACTGTCGATAGAGATTACGGCGTGTTGAACAAAGT
CTTCCATAACATTACAGATACACATGTAGCTCACCATCTCTTCTCAACCA
TGCCACATTACCATGCTATGGAGGCGACAATCGCGATGAAGCCAATCCTC
GGCGAGTATTACCAGTTCGATGGGATGCCCTTTTACAAGGCGGCGTGGCG
GGAGGCGAAAGAGTGTCTTTACGTAGAACCGGACGAGAATTCTCCGACCA
AAGGCCTTTTCTGGTACAGGAACAAACTGTGATAACATGTCTGCTGGTAA
GTTTGATGAAGATGTAGTTACAGTTTAATTAAGTACTATTTGAGCAGTGG
TTTCCAAAGTTGTTCAGCAAATAAATAAATTTTTTTTTTAAAAAAAAGCT
CTCGGTACTTGGTTTGTAATGGTCCTGTATTAAACATTTTAAGTACTTAA
GAACTCTAATTATGTGTGTGTGACATAAAATTTCTCCTAATCTGNNCATT
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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