EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            R +VG L+W  +D +LE  F + G + ++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG +L GR I V+ A++R S
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGS 87          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +++VG LS+  D+  LET+F + G++ E  VV DRE+ RSRGFGFVT+ + E+  +A+  +NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   11 GGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 250
            G  R+YVGN+   +++  L T+  E G +  A+V+YD+ SGRSR FGFVT  + E+ +  I+ LN  ++ GR I+V++ E
Sbjct:   82 GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITE 161          

HSP 2 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +VY+GNL+  V +  L+  F E+GKVL AKV     + +S GFGFV++SS EEV+ AI +LN   L G+ IRV+ A
Sbjct:  185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            AS   +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            AS   +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            AS   +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA--EARPSR 265
            +S   +++VG L++  D+ ALE  F   G + E  VV DRE+ RSRGFGF+T+++ E   +A+ ++NG  L GR IRV  A   AR SR
Sbjct:    2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSR 90          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            AS   +++VG LS+  ++ +LE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            AS   +++VG LS+  ++ +LE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 2
Query:   62 ALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +L + F   G+VLE+K++ DRE+ RSRGFGFVT+S+ E + +AI+ +NG +L GR I V+ A++R  R
Sbjct:    2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GRP1_DAUCA3.811e-1544.44Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
CIRBP_RANCA4.659e-1346.05Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
RRP2_SPIOL1.355e-1241.2530S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
CIRBP_RAT1.770e-1243.21Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE1.770e-1243.21Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR1.770e-1243.21Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
RBM3_MOUSE3.020e-1243.82Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
CIRBP_PONAB3.944e-1241.98Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN3.944e-1241.98Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
GRP1_SORBI6.727e-1248.53Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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