EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +YVGNLS+ V + +L  +F E G V   ++  DRE+GR RGFGFV   S  E   AI++L+G +  GR ++V+ A+ R  R
Sbjct:    3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPREDR 83          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 256
            ++VG+L+  VDD  L   F++    L   V++D ++G SRG+GFV+++S ++  NA+DS+ G DL GR +R++ A  R
Sbjct:  164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +++VG L++   + +LE +F + G+V E  VV DRES RSRGFGFVT+ + E+  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBPA_SYNY3 (Putative RNA-binding protein rbpA OS=Synechocystis sp. (strain PCC 6803) GN=rbpA PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +YVGNLS+ V +  L  +F E G V   ++  DRE+GR RGFGFV   +  E   AI++L+G +  GR ++V+ A+ R +R
Sbjct:    3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPRENR 83          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +S   +++VG L++  D+ ALE  F   G + E  VV DRE+ RSRGFGF+T+++ E   + + ++NG  L GR IRV  A
Sbjct:    2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 247
            +S   +++VG L++  D+ ALE  F   G + E  VV DRE+ RSRGFGF+T+++ E    A+ ++NG  L GR IRV  A
Sbjct:    2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/78 (37.18%), Postives = 53/78 (67.95%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRV 238
            ++G  R+YVG+L + + +  L  +F   G++   +++ D E+GRS+G+GF+T+S +E    A++ LNG +LAGR ++V
Sbjct:  246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/78 (37.18%), Postives = 53/78 (67.95%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRV 238
            ++G  R+YVG+L + + +  L  +F   G++   +++ D E+GRS+G+GF+T+S +E    A++ LNG +LAGR ++V
Sbjct:  246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/78 (37.18%), Postives = 53/78 (67.95%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRV 238
            ++G  R+YVG+L + + +  L  +F   G++   +++ D E+GRS+G+GF+T+S +E    A++ LNG +LAGR ++V
Sbjct:  246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VGN+ +   +  L+ +F E G V+  ++VYDRE+G+ +G+GF  Y   E   +A+ +LNG + +GRA+RV  A +  ++ +
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RBPB_ANASP8.786e-1243.21Putative RNA-binding protein rbpB OS=Anabaena sp. ... [more]
PUB1_YEAST1.147e-1139.74Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
CIRBP_XENTR1.147e-1144.74Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
RBPA_SYNY31.957e-1141.98Putative RNA-binding protein rbpA OS=Synechocystis... [more]
RBM3_RAT1.957e-1141.98Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
RBM3_HUMAN1.957e-1143.21Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
RBM39_PONAB4.360e-1137.18RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE4.360e-1137.18RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN4.360e-1137.18RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
CSTFT_MOUSE4.360e-1136.14Cleavage stimulation factor 64 kDa subunit, tau va... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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