EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    8 SGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            S   ++++G L++  ++  LE  F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A      R+
Sbjct:    2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERR 89          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRR 268
            VY+ N    VDD +L+ LF + GK L  KV+ D  +G+S+GFGFV+Y   E+ + A++ +NG +++G+ I V  A+ +  R+
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   23 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            V+VG LSW VDD  L   F E G ++ A+V+ D +SGRS+G+G+V + + E    A+ +    ++ GR + + ++  RP+  Q
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQ 347          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CIRBA_XENLA7.438e-1136.36Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
PABP4_HUMAN9.714e-1139.02Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
GAR2_SCHPO9.714e-1136.14Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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