EY756366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.295e-19 Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRG 638 +L+VGNLP+ + S +L+ +F +AGTV E++Y+R TDRSRGF FVTM +VEEA++A+ +F + GR + VN PRG Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRG 195 HSP 2 Score: 30.8018 bits (68), Expect = 7.295e-19 Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 2 Query: 665 VEPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARVVYDRET 790 V+ ++YV NL W + L F + ++A+V+YDR + Sbjct: 213 VDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSS 254 HSP 3 Score: 20.4014 bits (41), Expect = 7.295e-19 Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = 1 Query: 781 QGDGRSRGFGLL 816 + GRSRGFG + Sbjct: 252 RSSGRSRGFGFI 263
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.032e-15 Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 3 Query: 399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 620 +L+VGN+P ++++++L + E+ G +EIAEV+Y++ + RSR FGFVTM TVE+A +E + +I GR + VN Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158 HSP 2 Score: 31.5722 bits (70), Expect = 1.032e-15 Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 2 Query: 638 TQPERAPRVVEPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARV 772 TQ E + + VE +++Y+GNL V L+ F E GKV+ A+V Sbjct: 172 TQAEDS-QFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKV 215
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.392e-12 Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3 Query: 396 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT--VNKAAPRGHS 644 A +FVG L + +D E L FE G V A VIY R TDRSRG+G+V AEKA++ +IDGR + ++ + P G++ Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN 252 HSP 2 Score: 30.0314 bits (66), Expect = 3.392e-12 Identity = 13/42 (30.95%), Postives = 25/42 (59.52%), Query Frame = 2 Query: 668 EPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARVVYDRETD 793 EP +++GNL + + ++F +HG+VV+ R+ ET+ Sbjct: 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETE 305
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 635 + FVG L + D + L F K G V +++I +RET RSRGFGFVT ++ E +A+E + D+DGR +TVN+A R Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11 Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D + + L +F K G + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11 Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D + + L +F K G + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11 Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D + + L +F K G + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D D + L +F K G ++ V+ +RET RSRGFGFVT E+A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11 Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D + + L +F K G + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11 Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626 + KLFVG L +D + + L +F K G + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of EY756366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >EY756366 ID=EY756366; Name=EY756366; organism=Citrus sinensis; type=EST; length=858bpback to top |