EY756366

Overview
NameEY756366
Unique NameEY756366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.295e-19
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRG 638
            +L+VGNLP+ + S +L+ +F +AGTV   E++Y+R TDRSRGF FVTM +VEEA++A+ +F    + GR + VN    PRG
Sbjct:  115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRG 195          

HSP 2 Score: 30.8018 bits (68), Expect = 7.295e-19
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 2
Query:  665 VEPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARVVYDRET 790
            V+   ++YV NL W +    L   F +    ++A+V+YDR +
Sbjct:  213 VDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSS 254          

HSP 3 Score: 20.4014 bits (41), Expect = 7.295e-19
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  781 QGDGRSRGFGLL 816
            +  GRSRGFG +
Sbjct:  252 RSSGRSRGFGFI 263          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.032e-15
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 620
            +L+VGN+P ++++++L  + E+ G +EIAEV+Y++ + RSR FGFVTM TVE+A   +E  +  +I GR + VN
Sbjct:   85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158          

HSP 2 Score: 31.5722 bits (70), Expect = 1.032e-15
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  638 TQPERAPRVVEPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARV 772
            TQ E + + VE  +++Y+GNL   V    L+  F E GKV+ A+V
Sbjct:  172 TQAEDS-QFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKV 215          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.392e-12
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  396 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT--VNKAAPRGHS 644
            A +FVG L + +D E L   FE  G V  A VIY R TDRSRG+G+V       AEKA++     +IDGR +   ++ + P G++
Sbjct:  168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN 252          

HSP 2 Score: 30.0314 bits (66), Expect = 3.392e-12
Identity = 13/42 (30.95%), Postives = 25/42 (59.52%), Query Frame = 2
Query:  668 EPGFRIYVGNLPWEVXYARLEQVF*EHGKVVNARVVYDRETD 793
            EP   +++GNL +      + ++F +HG+VV+ R+    ET+
Sbjct:  264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETE 305          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  399 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 635
            + FVG L +  D + L   F K G V  +++I +RET RSRGFGFVT ++ E   +A+E  +  D+DGR +TVN+A  R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D D + L  +F K G ++   V+ +RET RSRGFGFVT    E+A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of EY756366 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  393 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 626
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of EY756366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ROC5_NICSY7.295e-1949.3833 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RRP2_SPIOL1.032e-1544.5930S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
NSR1_YEAST3.392e-1241.18Nuclear localization sequence-binding protein OS=S... [more]
GRP_HORVU4.037e-1144.30Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
CIRBP_PONAB6.886e-1139.74Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN6.886e-1139.74Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
CIRBP_RAT8.994e-1139.74Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA8.994e-1142.31Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE8.994e-1139.74Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR8.994e-1139.74Cold-inducible RNA-binding protein OS=Cricetulus g... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756366 ID=EY756366; Name=EY756366; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGCCATATTTCTCTATCCACCCCAGACCCAGACCTATCAAG
CTTCACCTTTCCGACTCCTCCTTATCTTCGAAAGGTTTCTCCTTTAAGCT
CAAAAAAACTATCCATTTCTCTTCATTCACGACTTTCGTTGCCCAAACGT
CGGACTGGGCCGACCAAGAAGAAGACAAAGACAACACCACCATCACTCTT
GAACAAGAACAAGAAGAGAATGGGGAAGAAGAACCGAATTGGGAAAATCA
AGGAGCCGATGAAACTGAAGGGAATTTATCTGATTGGGGGGAACCCGAAG
GCGAAGACACAGTTGTTGAGGCTGGTGAAAGGCAGGAGGAGAGTGGTGAA
GAGGGCGTTTTTGAGGAAGAGGAATTTGTGGAACCACCTGAGGATGCTAA
GTTGTTTGTTGGGAACTTGCCCTATGATGTTGATAGTGAAAAGCTTGCTA
TGCTTTTTGAGAAGGCTGGAACTGTCGAGATTGCCGAGGTTATTTACAAC
AGGGAGACTGACCGGAGTCGTGGCTTTGGGTTCGTGACAATGAGTACTGT
TGAGGAAGCTGAAAAGGCTGTGGAAATGTTTCACAGATATGACATAGATG
GAAGGCTTTTGACGGTAAATAAAGCTGCTCCAAGAGGACACAGCCTGAAC
GCGCCCCTCGTGTGGTTGAGCCTGGTTTTAGAATCTATGTGGGCAACCTG
CCATGGGAAGTGGNATATGCTCGTCTAGAGCAAGTTTTTTAGGAGCATGG
TAAGGTGGTGAATGCCCGGGTTGTTTATGACAGGGAGACGGACGTTCACG
AGGTTTTGGCTTGTTACAATGTCTAGTGAGATGAATTGATGACGCATTGC
TGCTCTGG
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