EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_NITSB (50S ribosomal protein L6 OS=Nitratiruptor sp. (strain SB155-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.103e-33
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R LT+N + G++KGFEKKL++ GVGYRAA++G+ L L LGFSHP+   IP+GI+++VE+N  IT+ G+DK  +GQ AA IR +RPPEPYKGKGVKYVDEVI RK GK+ ++
Sbjct:   69 RALTNNAIEGLTKGFEKKLEINGVGYRAAVKGKELELQLGFSHPILYPIPEGIQISVEKNI-ITIKGHDKQKVGQVAAEIRSFRPPEPYKGKGVKYVDEVIIRKAGKTAKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MYCGE (50S ribosomal protein L6 OS=Mycoplasma genitalium GN=rplF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.458e-33
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSRE 418
            L +N V+GV+KGFEKKL +VGVGYRA +EGQ L L LG+SHP++  IP+ + V VE+NT IT+SG  K  +GQFA  IRKWR PEPYKGKGV Y +EVI RK GK+ E
Sbjct:   74 LVNNAVIGVTKGFEKKLILVGVGYRANVEGQFLNLQLGYSHPIKELIPNQLTVKVEKNTEITISGIKKELVGQFATEIRKWRKPEPYKGKGVLYFNEVIVRKQGKTAE 181          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEAE (50S ribosomal protein L6 OS=Pseudomonas aeruginosa GN=rplF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMVVGVS+GFE+KLQ+VGVGY+A  +GQVL LSLGFSHPV   +P GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVVGVSQGFERKLQLVGVGYKAQAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEAB (50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMVVGVS+GFE+KLQ+VGVGY+A  +GQVL LSLGFSHPV   +P GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVVGVSQGFERKLQLVGVGYKAQAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEA8 (50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMVVGVS+GFE+KLQ+VGVGY+A  +GQVL LSLGFSHPV   +P GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVVGVSQGFERKLQLVGVGYKAQAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEA7 (50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain PA7) GN=rplF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMVVGVS+GFE+KLQ+VGVGY+A  +GQVL LSLGFSHPV   +P GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVVGVSQGFERKLQLVGVGYKAQAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MARMS (50S ribosomal protein L6 OS=Marinomonas sp. (strain MWYL1) GN=rplF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMVVGVS+GFEK+L + GVGYRAAL+G VL LSLGFSHPV   +P+G+       T I + G DK A+GQ AA +R +RPPEPYKGKGV+Y DEVIRRK  K +
Sbjct:   68 TRALVNNMVVGVSQGFEKRLFLQGVGYRAALKGNVLNLSLGFSHPVDYELPEGVTAECASQTEIVIRGIDKQAVGQVAAEVRGFRPPEPYKGKGVRYSDEVIRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEA6 (50S ribosomal protein L6 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 2
Query:   56 MASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            +A+  A +   R+L D MV+GVS+GFEKKLQ+ GVGYRAA +G+ L L+LGFSHPV   +P+GI V     T I V G DK  +GQ AA+IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   58 VANGWAQAGTARSLLDAMVIGVSQGFEKKLQLNGVGYRAAAQGKKLNLTLGFSHPVAYEMPEGISVETPSQTEIVVKGADKQLVGQVAANIRGYRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_GEOBB (50S ribosomal protein L6 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL +NMV+GVSKGFE  L++ GVGYRA ++G VL L+LGFSHPV   +P GI V VE+ T++ V G DK  +G+ AA IR +RPPEPYKGKGVKY DE I RK GK+
Sbjct:   68 TRTLINNMVIGVSKGFETLLEINGVGYRAEVKGNVLNLALGFSHPVNFELPTGITVEVEKMTKLKVMGIDKEVVGETAAKIRAFRPPEPYKGKGVKYADETILRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CARHZ (50S ribosomal protein L6 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL +NM+VGV+ G++K L++VGVGYRAA +G+ LVL++G+SHPV M  P+GI++ V    +I V G DK  +G FAA+IR  R PEPYKGKG+KY DEVIRRK GK+
Sbjct:   68 TRTLINNMIVGVTNGYQKSLELVGVGYRAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKGKGIKYTDEVIRRKAGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_NITSB1.103e-3361.2650S ribosomal protein L6 OS=Nitratiruptor sp. (str... [more]
RL6_MYCGE2.458e-3362.9650S ribosomal protein L6 OS=Mycoplasma genitalium ... [more]
RL6_PSEAE3.210e-3361.8250S ribosomal protein L6 OS=Pseudomonas aeruginosa... [more]
RL6_PSEAB3.210e-3361.8250S ribosomal protein L6 OS=Pseudomonas aeruginosa... [more]
RL6_PSEA83.210e-3361.8250S ribosomal protein L6 OS=Pseudomonas aeruginosa... [more]
RL6_PSEA73.210e-3361.8250S ribosomal protein L6 OS=Pseudomonas aeruginosa... [more]
RL6_MARMS3.210e-3361.8250S ribosomal protein L6 OS=Marinomonas sp. (strai... [more]
RL6_PSEA64.192e-3357.5050S ribosomal protein L6 OS=Pseudoalteromonas atla... [more]
RL6_GEOBB4.192e-3362.3950S ribosomal protein L6 OS=Geobacter bemidjiensis... [more]
RL6_CARHZ4.192e-3359.6350S ribosomal protein L6 OS=Carboxydothermus hydro... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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