EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CAMJR (50S ribosomal protein L6 OS=Campylobacter jejuni (strain RM1221) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R L  N+VVG+++GF K L++ GVGY+AAL+G+VL LSLGFSHP+   IP+GI++ V++NT I V G DK  +GQ AA IR++RPPEPYKGKGVKY DE I RK GK+ ++
Sbjct:   69 RALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEGIEIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKGKGVKYSDERIIRKAGKTSKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CAMJJ (50S ribosomal protein L6 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R L  N+VVG+++GF K L++ GVGY+AAL+G+VL LSLGFSHP+   IP+GI++ V++NT I V G DK  +GQ AA IR++RPPEPYKGKGVKY DE I RK GK+ ++
Sbjct:   69 RALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEGIEIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKGKGVKYSDERIIRKAGKTSKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CAMJE (50S ribosomal protein L6 OS=Campylobacter jejuni GN=rplF PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R L  N+VVG+++GF K L++ GVGY+AAL+G+VL LSLGFSHP+   IP+GI++ V++NT I V G DK  +GQ AA IR++RPPEPYKGKGVKY DE I RK GK+ ++
Sbjct:   69 RALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEGIEIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKGKGVKYSDERIIRKAGKTSKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CAMJ8 (50S ribosomal protein L6 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R L  N+VVG+++GF K L++ GVGY+AAL+G+VL LSLGFSHP+   IP+GI++ V++NT I V G DK  +GQ AA IR++RPPEPYKGKGVKY DE I RK GK+ ++
Sbjct:   69 RALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEGIEIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKGKGVKYSDERIIRKAGKTSKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SHEHH (50S ribosomal protein L6 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.742e-31
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 2
Query:   53 EMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            E A + A +   R L +NMVVGV++GF KKL +VGVGYRA L G+ + L+LGFSHP+   +PDG+       T I +SG DK  IGQ AA IR +RPPEPYKGKGV+Y DE +RRK  K +
Sbjct:   56 ESAKTAAQAGTARALINNMVVGVTEGFVKKLTLVGVGYRAKLAGKDIDLTLGFSHPLVHKLPDGVTAECPSQTEIVLSGTDKQLIGQVAAEIRGYRPPEPYKGKGVRYADEQVRRKEAKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEHT (50S ribosomal protein L6 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.742e-31
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            R L +NM+VG  +G+EKKLQ+VGVGYRAA +G+ L L+LGFSHPV   +P+GI +     T + V G DK  +GQ AA+IR +R PEPYKGKGV+Y DE +RRK  K +
Sbjct:   69 RALINNMIVGTHEGYEKKLQLVGVGYRAAAKGKTLDLTLGFSHPVHFAVPEGITIETPSQTEVLVKGVDKQLVGQTAANIRAYRKPEPYKGKGVRYSDENVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MYCGA (50S ribosomal protein L6 OS=Mycoplasma gallisepticum GN=rplF PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.742e-31
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSRE 418
            L  N + GV+ GF+K+L++VGVGYRA+L+  VL L LG+SHP+ + IP  +KV V++NT ITVSG DK  +G+FA  IRKWR PEPYKGKGV Y++E I RK GK+ E
Sbjct:   73 LIKNALEGVTVGFKKELRLVGVGYRASLKDNVLNLQLGYSHPINLDIPKDLKVTVDKNTEITVSGIDKQKVGEFAIQIRKWRMPEPYKGKGVLYLNEQIIRKAGKTAE 180          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.742e-31
Identity = 65/127 (51.18%), Postives = 90/127 (70.87%), Query Frame = 2
Query:   35 AQSRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            A S  SE   + A+   TR++ +N+V+GVS+GFE+KL++ GVGY+AA++G+ L LSLG+SH +   IPDGI +   + T ++++G DK  +GQ AA IR  RPPEPYKGKGVKY  E I RK GK +
Sbjct:   51 AVSPRSEDKKARAAWGMTRSIVNNLVIGVSQGFERKLEITGVGYKAAVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_XANC5 (50S ribosomal protein L6 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rplF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.142e-30
Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   62 SSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGK 409
            S IA +   R +  NMV GVS+GFE+KL++VGVGYRAA++G+ L L+LGFSHP+    P+GI ++    T I V G DK  +G+ AA IR +RPPEPYKGKGVKY DEVI RK  K
Sbjct:   58 SQIALTGTVRAILANMVKGVSEGFERKLELVGVGYRAAMQGKDLSLALGFSHPLVFVAPEGITLSTPTQTEIVVQGADKQRVGEVAAKIRGFRPPEPYKGKGVKYADEVIIRKEAK 173          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_THIDA (50S ribosomal protein L6 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.142e-30
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            R L +NMV GVSKGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P GIKV     T I + G D+ A+GQ AA +R +RPPEPYKGKGV+Y DEV+ +K  K +
Sbjct:   68 RALVNNMVQGVSKGFERKLTLVGVGYRAQAQGDALNLSLGFSHPVVHKMPAGIKVETPTQTEIVIKGIDRQAVGQVAADVRAYRPPEPYKGKGVRYSDEVVIKKETKKK 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_CAMJR5.125e-3159.4650S ribosomal protein L6 OS=Campylobacter jejuni (... [more]
RL6_CAMJJ5.125e-3159.4650S ribosomal protein L6 OS=Campylobacter jejuni s... [more]
RL6_CAMJE5.125e-3159.4650S ribosomal protein L6 OS=Campylobacter jejuni G... [more]
RL6_CAMJ85.125e-3159.4650S ribosomal protein L6 OS=Campylobacter jejuni s... [more]
RL6_SHEHH8.742e-3154.5550S ribosomal protein L6 OS=Shewanella halifaxensi... [more]
RL6_PSEHT8.742e-3155.9650S ribosomal protein L6 OS=Pseudoalteromonas halo... [more]
RL6_MYCGA8.742e-3158.3350S ribosomal protein L6 OS=Mycoplasma galliseptic... [more]
RL6_BEII98.742e-3151.1850S ribosomal protein L6 OS=Beijerinckia indica su... [more]
RL6_XANC51.142e-3056.9050S ribosomal protein L6 OS=Xanthomonas campestris... [more]
RL6_THIDA1.142e-3058.7250S ribosomal protein L6 OS=Thiobacillus denitrifi... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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