EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_THICR (50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.593e-32
Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = 2
Query:   50 SEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            +E  ++ A +   R++ +NMV+GV++GFEKKLQ+VGVGYRA  +G+VL L+LGFSHPV   +P+G+ V     T I V G DK  +GQ AA IR +RPPEPYKGKGVKY DE I RK  K +
Sbjct:   56 NESKNAWAQAGTARSIINNMVLGVTEGFEKKLQLVGVGYRAQAQGKVLNLTLGFSHPVNHELPEGVTVETPSQTEIVVKGADKQVVGQVAAEIRGYRPPEPYKGKGVKYADEYILRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_OCEIH (50S ribosomal protein L6 OS=Oceanobacillus iheyensis GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.593e-32
Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR+L +NMV+GVSKGFEK L+++GVGYRA  +G   V++ G+SHPV +   DGI++ V +NT+ITV G DK  +G  AA+IR  RPPEPYKGKG++Y DE +RRK GK+
Sbjct:   68 TRSLINNMVIGVSKGFEKSLEIIGVGYRAQKQGDKTVINAGYSHPVELEAIDGIEIEVPKNTQITVKGIDKELVGAIAANIRAIRPPEPYKGKGIRYTDEYVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CYAP7 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7424) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.593e-32
Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NMV GVSKGFEK+L++ GVGYRAA +G  L L++G+S PV M +P GI V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  EV+RRK GK+
Sbjct:   69 RTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSGIGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOTE (50S ribosomal protein L6 OS=Clostridium tetani GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.593e-32
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR+L +NMVVGV++G+EKKL++VGVGYRA L+G+ LVL+LGFSHPV +   +G++  ++   +ITV G DK  +G  A+ IR WR PEPYKGKG+KY +E IRRK GK+
Sbjct:   69 TRSLVNNMVVGVTEGYEKKLELVGVGYRAQLQGKKLVLNLGFSHPVEIEAKEGVEFQLDGTNKITVKGIDKELVGAVASDIRSWRKPEPYKGKGIKYENEAIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOBM (50S ribosomal protein L6 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.593e-32
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GV++G+ K L+++GVGYRA L+G+ LVLSLGFSHPV M    G++  VE  T++ V G DK  +G  AA IRKWR PEPYKGKG+KY +EVIRRK GK+
Sbjct:   69 TRALINNMVTGVNEGYVKTLELIGVGYRAQLQGKKLVLSLGFSHPVEMEAVSGVEFEVEGGTKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOB6 (50S ribosomal protein L6 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.081e-32
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GV++G+ K L+++GVGYRA L+G+ LVLSLGFSHPV M    G++  VE  T++ V G DK  +G  AA IRKWR PEPYKGKG+KY +EVIRRK GK+
Sbjct:   69 TRALINNMVTGVNEGYIKTLELIGVGYRAQLQGKKLVLSLGFSHPVEMEAVSGVEFEVEGGTKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SYNJB (50S ribosomal protein L6 OS=Synechococcus sp. GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NMV GVSKGFE++L++VGVGYRAA++G  LVL++G+SHPV +  P GI++ VE N  I VSG DK  +G  AA IR  RPPEPYKGKG++Y+ E +RRK GKS
Sbjct:   69 RTLVANMVDGVSKGFERRLELVGVGYRAAIQGSKLVLNVGYSHPVEIPFPPGIQIAVEGNNIIVVSGTDKELVGNTAARIRAVRPPEPYKGKGIRYLGEQVRRKAGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PROM5 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32
Identity = 68/108 (62.96%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NMV GV+ G+ KKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY DE I RK GKS
Sbjct:   69 RTLISNMVQGVTDGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYQDERIIRKAGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_GEOSF (50S ribosomal protein L6 OS=Geobacter sp. (strain FRC-32) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL +NMV GV+KGFE  L++ GVGYRA L+G VL LSLG+SHP+  ++P GI V V++ T+I V G DK  +GQ AA IR +R PEPYKGKGVKY DE I RK GK+
Sbjct:   68 TRTLINNMVTGVTKGFETALEINGVGYRAELKGDVLNLSLGYSHPINFSLPKGINVEVDKMTKILVKGVDKELVGQTAAKIRDFRGPEPYKGKGVKYADETILRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_LACPL (50S ribosomal protein L6 OS=Lactobacillus plantarum GN=rplF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 64/109 (58.72%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR   +NMV GV+KGF K LQ+VGVGYRA L+G+ LVLS+G+SHPV    P+ + V V +NT I +SG  K A+G FAA +R  R PEPYKGKG++YVDE +RRK GK+
Sbjct:   68 TRANVNNMVEGVTKGFTKNLQLVGVGYRAQLQGKKLVLSVGYSHPVEFATPENLTVEVPDNTHINISGIGKQAVGDFAAEVRAVRSPEPYKGKGIRYVDEYVRRKEGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_THICR1.593e-3254.9250S ribosomal protein L6 OS=Thiomicrospira crunoge... [more]
RL6_OCEIH1.593e-3257.8050S ribosomal protein L6 OS=Oceanobacillus iheyens... [more]
RL6_CYAP71.593e-3261.1150S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CLOTE1.593e-3257.8050S ribosomal protein L6 OS=Clostridium tetani GN=... [more]
RL6_CLOBM1.593e-3259.6350S ribosomal protein L6 OS=Clostridium botulinum ... [more]
RL6_CLOB62.081e-3259.6350S ribosomal protein L6 OS=Clostridium botulinum ... [more]
RL6_SYNJB2.718e-3261.1150S ribosomal protein L6 OS=Synechococcus sp. GN=r... [more]
RL6_PROM52.718e-3262.9650S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_GEOSF2.718e-3261.4750S ribosomal protein L6 OS=Geobacter sp. (strain ... [more]
RL6_LACPL4.635e-3258.7250S ribosomal protein L6 OS=Lactobacillus plantaru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
back to top