EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ALCBS (50S ribosomal protein L6 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 63/110 (57.27%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GV+ GFE+KLQ++GVGYRA  +G+VL L+LGFSHPV   +P+GI V     T I + G DK  +GQ AA++R +RPPEPYKGKGV+Y DE +RRK  K +
Sbjct:   68 TRALLNNMVTGVADGFERKLQLLGVGYRAQAQGKVLNLTLGFSHPVAYQLPEGITVETPSQTEIVIKGIDKQLVGQVAANVRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEFS (50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain SBW25) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GVS+GFE+KLQ+VGVGY+A  +G VL L+LGFSHPV   +P+GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPEGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEF5 (50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GVS+GFE+KLQ+VGVGY+A  +G VL L+LGFSHPV   +P+GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPEGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DICTD (50S ribosomal protein L6 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV+GV++GFEK+L++ G GYRA ++G  LVL +GFSHPV + IP G+ V+V++NT+I+V G DK  +GQFAA +R  RP EPYKGKG++Y  E IR+K GK+
Sbjct:   69 TRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLVLEVGFSHPVELEIPTGLTVSVQDNTKISVKGIDKELVGQFAAIVRSVRPAEPYKGKGIRYEGEKIRQKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DESHY (50S ribosomal protein L6 OS=Desulfitobacterium hafniense (strain Y51) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 2
Query:   68 IASSFH--TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            ++ S H  TRTL  NMV GV+KGF K L MVGVGYRAA +G  LVLS+G SHPV +   +GI+V V    +I V G DK  +G FAA IRK RPPEPYKGKG+KY +EV+RRK GK+
Sbjct:   60 LSRSLHGLTRTLVANMVEGVTKGFSKSLDMVGVGYRAAKQGNKLVLSVGKSHPVELIPFEGIEVEVPAQNKIIVKGMDKELVGDFAAEIRKERPPEPYKGKGIKYENEVVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DESHD (50S ribosomal protein L6 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 2
Query:   68 IASSFH--TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            ++ S H  TRTL  NMV GV+KGF K L MVGVGYRAA +G  LVLS+G SHPV +   +GI+V V    +I V G DK  +G FAA IRK RPPEPYKGKG+KY +EV+RRK GK+
Sbjct:   60 LSRSLHGLTRTLVANMVEGVTKGFSKSLDMVGVGYRAAKQGNKLVLSVGKSHPVELIPFEGIEVEVPAQNKIIVKGMDKELVGDFAAEIRKERPPEPYKGKGIKYENEVVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLONN (50S ribosomal protein L6 OS=Clostridium novyi (strain NT) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +R SE     A    TR L +NMVVGV++G+EK L++VGVGYRA L+G+ L L+LG+SHPV +    G++  V E T++ VSG DK  +G  AA+IR WR PEPYKGKG+KY  EVIRRK GK+
Sbjct:   54 TRPSENVQHKALHGLTRALINNMVVGVTQGYEKTLELVGVGYRAQLKGKDLTLNLGYSHPVEIKAVKGVEYKVPEPTKVVVSGIDKELVGSVAANIRVWRKPEPYKGKGIKYAGEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_THISH (50S ribosomal protein L6 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   59 ASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            AS  A +   R L +NMVVGVS+GFE+KL++VGVGYRA  +G+ L L+LGFSHPV   +P+GI +     T I V G DK  +GQ AA IR +RPPEPYKGKGVKY +E I RK  K +
Sbjct:   59 ASKYAMAGTMRALVNNMVVGVSQGFERKLELVGVGYRAQAQGKTLNLTLGFSHPVAYPVPEGITIETPSQTEILVKGVDKQVVGQVAAEIRAFRPPEPYKGKGVKYANEQIIRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 61/108 (56.48%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R   +NM++GV++GF+K L ++GVGYRA L+G+ LVL++G+SHPV M  P+G+ V V  NT I +SG  K  +GQFAA IR  RPPEPYKGKG++Y DE +RRK GK+
Sbjct:   68 RANLNNMILGVTEGFKKTLDLIGVGYRAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKT 175          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_GEOMG (50S ribosomal protein L6 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +R  +   S ++   TRTL +NMVVGV+KGFEK L++ GVGYRA  +G VL LSLG+SHP+   +P GI V V++ T++ V G DK  +GQ AA IR +R PEPYKGKG+KY DE I RK GK+
Sbjct:   53 NRADDAIKSRSAHGLTRTLINNMVVGVTKGFEKILEINGVGYRAEAKGDVLSLSLGYSHPINFPLPKGITVEVDKMTKVFVRGIDKELVGQTAAKIRSFRGPEPYKGKGIKYADERILRKAGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_ALCBS4.635e-3257.2750S ribosomal protein L6 OS=Alcanivorax borkumensi... [more]
RL6_PSEFS6.054e-3259.0950S ribosomal protein L6 OS=Pseudomonas fluorescen... [more]
RL6_PSEF56.054e-3259.0950S ribosomal protein L6 OS=Pseudomonas fluorescen... [more]
RL6_DICTD6.054e-3256.8850S ribosomal protein L6 OS=Dictyoglomus turgidum ... [more]
RL6_DESHY6.054e-3259.8350S ribosomal protein L6 OS=Desulfitobacterium haf... [more]
RL6_DESHD6.054e-3259.8350S ribosomal protein L6 OS=Desulfitobacterium haf... [more]
RL6_CLONN6.054e-3254.8450S ribosomal protein L6 OS=Clostridium novyi (str... [more]
RL6_THISH7.907e-3256.3050S ribosomal protein L6 OS=Thioalkalivibrio sp. (... [more]
RL6_LACSS7.907e-3256.4850S ribosomal protein L6 OS=Lactobacillus sakei su... [more]
RL6_GEOMG7.907e-3254.8450S ribosomal protein L6 OS=Geobacter metallireduc... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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