EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DESAH (50S ribosomal protein L6 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R+L  NM+ GVS G+EKKL + G+GYRA + G  +VL++G+S+PV   +P GI   VE+NT +++SG DK  +G+ AA IR+ RPPEPYKGKG+ Y DE I +K GK+
Sbjct:   70 RSLVANMITGVSVGYEKKLLLNGIGYRAEVNGNTVVLNVGYSNPVNFELPKGISALVEKNTTLSLSGIDKEIVGETAARIRRIRPPEPYKGKGIMYSDERIIKKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURCJ (50S ribosomal protein L6 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rplF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYADEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURCH (50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain HI2424) GN=rplF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYADEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURCC (50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain MC0-3) GN=rplF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYADEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURCA (50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain AU 1054) GN=rplF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYADEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_TREDE (50S ribosomal protein L6 OS=Treponema denticola GN=rplF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 58/108 (53.70%), Postives = 84/108 (77.78%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R+L +NMV GVS GF K L + GVGYRA ++G++LV++LG+S+   + IP+GI+V V++  ++ +SG  K A+GQFA+ +RK R PEPYKGKG++Y DE+I+RK GKS
Sbjct:   70 RSLLNNMVTGVSTGFTKTLVINGVGYRAEVQGKLLVMALGYSNDFSVIIPEGIEVKVDQ-LKVIISGASKEAVGQFASQVRKLRGPEPYKGKGIRYEDEIIKRKVGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SILST (50S ribosomal protein L6 OS=Silicibacter sp. (strain TM1040) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            +RT+  NMV GV++GF+K+L++ GVGYRA ++G  L L+LG+SH V  T P+G+ +   + T I V G D  A+G+ AA IR WR PEPYKGKG++Y  E I RK GK +
Sbjct:   68 SRTMVANMVQGVTQGFKKELEIQGVGYRAQMQGNTLKLNLGYSHDVDFTAPEGVTITAPKQTEIVVEGADAQAVGEVAAKIRDWRRPEPYKGKGIRYKGEFIFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_FRAP2 (50S ribosomal protein L6 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   62 SSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            ++IA S   R + +NMV GVSKGFE+KL+++GVGYRA  +G  L L+LGFSHPV   +P GI       T I + G DK  +G+ A+ IR++R PEPYKGKGV+Y DE + +K  K +
Sbjct:   61 NAIAQSGTARAILNNMVEGVSKGFERKLKIIGVGYRAKAQGSELNLTLGFSHPVVYKLPQGITAETPAPTEIILKGADKEVLGKVASEIREYRKPEPYKGKGVRYEDEYVAKKEAKKK 178          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURCM (50S ribosomal protein L6 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVQGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYSDEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ACIAD (50S ribosomal protein L6 OS=Acinetobacter sp. (strain ADP1) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 55/109 (50.46%), Postives = 79/109 (72.48%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            R + +N+V GVS+GFE+KLQ++GVGY+AA++G  + L+LGFSHP+  ++P+G+       T I +   DK  +GQ A+ IR +RPPEPYKGKGV+Y DEV+ RK  K +
Sbjct:   69 RAVLNNLVKGVSEGFERKLQLIGVGYKAAVKGTSINLNLGFSHPIDYSLPEGVTAETPTATEIILKSADKQLLGQVASEIRGYRPPEPYKGKGVRYSDEVVLRKEAKKK 177          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_DESAH9.046e-2852.7850S ribosomal protein L6 OS=Desulfobacterium autot... [more]
RL6_BURCJ9.046e-2849.6050S ribosomal protein L6 OS=Burkholderia cepacia (... [more]
RL6_BURCH9.046e-2849.6050S ribosomal protein L6 OS=Burkholderia cenocepac... [more]
RL6_BURCC9.046e-2849.6050S ribosomal protein L6 OS=Burkholderia cenocepac... [more]
RL6_BURCA9.046e-2849.6050S ribosomal protein L6 OS=Burkholderia cenocepac... [more]
RL6_TREDE1.182e-2753.7050S ribosomal protein L6 OS=Treponema denticola GN... [more]
RL6_SILST1.182e-2750.9150S ribosomal protein L6 OS=Silicibacter sp. (stra... [more]
RL6_FRAP21.182e-2750.0050S ribosomal protein L6 OS=Francisella philomirag... [more]
RL6_BURCM1.182e-2749.6050S ribosomal protein L6 OS=Burkholderia ambifaria... [more]
RL6_ACIAD1.182e-2750.4650S ribosomal protein L6 OS=Acinetobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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