EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ROSDO (50S ribosomal protein L6 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            +RT+  N+V GVS+GF+K+L++ GVGYRAA+ G  L L+LG SH V  T P G+ V   + T I V G D+  +GQ AA+IR+WR PEPYKGKG++Y  E + RK GK +
Sbjct:   68 SRTMVANLVTGVSEGFKKELEIQGVGYRAAMTGNTLKLNLGLSHDVDYTPPAGVTVTAPKQTEIVVEGIDEQLVGQVAANIRQWRKPEPYKGKGIRYKGEFVFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_RALME (50S ribosomal protein L6 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            R L  NMV GV+ GFE+KLQ+VGVGYRA L+G  L L LGFSH V   +P+G+K      T I + G DK  +GQ AA +R +RPPEPYKGKGV+Y DE +  K  K +
Sbjct:   69 RALAANMVKGVTTGFERKLQLVGVGYRAQLQGAALKLQLGFSHDVIHEMPEGVKAETPTQTEIIIKGADKQKVGQVAAEVRAYRPPEPYKGKGVRYADERVILKETKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURVG (50S ribosomal protein L6 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 2
Query:   47 LSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            ++E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   54 VNESREANAMSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYSDEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_BURA4 (50S ribosomal protein L6 OS=Burkholderia ambifaria (strain MC40-6) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   41 SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            S + E   + A S   R +  N V GV+KGFE+KL +VGVGYRA  +G  L LSLGFSHPV   +P+G+K      T I + G +K  +GQ AA +R +RPPEPYKGKGV+Y DEV+  K  K +
Sbjct:   52 SPVDESREANALSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKAETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKGKGVRYSDEVVILKETKKK 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SYMTH (50S ribosomal protein L6 OS=Symbiobacterium thermophilum GN=rplF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL  NMV GV+KG+ K L++VG GYRAA  G  L LS+G+SHPV    P GI+  V    ++ V+G DK  +GQ AA IR  RPPEPY GKG+KY  E IRRK GK+
Sbjct:   68 TRTLIANMVEGVTKGYSKTLELVGTGYRAAKTGNQLTLSVGYSHPVVFNPPPGIEFQVPAPNQVIVAGIDKQLVGQVAADIRATRPPEPYLGKGIKYAGEHIRRKVGKA 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_STAAW (50S ribosomal protein L6 OS=Staphylococcus aureus (strain MW2) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GVS+G+ K L++VGVGYRA ++G+ L+L++G+SHPV +   + I  +VE+NT + V G  K  +G  A++IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_STAAT (50S ribosomal protein L6 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GVS+G+ K L++VGVGYRA ++G+ L+L++G+SHPV +   + I  +VE+NT + V G  K  +G  A++IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_STAAS (50S ribosomal protein L6 OS=Staphylococcus aureus (strain MSSA476) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GVS+G+ K L++VGVGYRA ++G+ L+L++G+SHPV +   + I  +VE+NT + V G  K  +G  A++IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_STAAR (50S ribosomal protein L6 OS=Staphylococcus aureus (strain MRSA252) GN=rplF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GVS+G+ K L++VGVGYRA ++G+ L+L++G+SHPV +   + I  +VE+NT + V G  K  +G  A++IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_STAAN (50S ribosomal protein L6 OS=Staphylococcus aureus (strain N315) GN=rplF PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV GVS+G+ K L++VGVGYRA ++G+ L+L++G+SHPV +   + I  +VE+NT + V G  K  +G  A++IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_ROSDO1.543e-2751.8250S ribosomal protein L6 OS=Roseobacter denitrific... [more]
RL6_RALME1.543e-2754.1350S ribosomal protein L6 OS=Ralstonia metalliduran... [more]
RL6_BURVG1.543e-2749.5950S ribosomal protein L6 OS=Burkholderia vietnamie... [more]
RL6_BURA41.543e-2749.6050S ribosomal protein L6 OS=Burkholderia ambifaria... [more]
RL6_SYMTH2.015e-2755.9650S ribosomal protein L6 OS=Symbiobacterium thermo... [more]
RL6_STAAW2.015e-2751.3850S ribosomal protein L6 OS=Staphylococcus aureus ... [more]
RL6_STAAT2.015e-2751.3850S ribosomal protein L6 OS=Staphylococcus aureus ... [more]
RL6_STAAS2.015e-2751.3850S ribosomal protein L6 OS=Staphylococcus aureus ... [more]
RL6_STAAR2.015e-2751.3850S ribosomal protein L6 OS=Staphylococcus aureus ... [more]
RL6_STAAN2.015e-2751.3850S ribosomal protein L6 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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