EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DESAD (50S ribosomal protein L6 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R+L  N + GVSKGF K L++VGVGY+  ++G+ +VL++GFSHPV   +P GI+ + E NT++T+SG DK  +G+ AA +R+ RPPEPYKGKG+KY+DE IRRK GKS
Sbjct:   69 RSLLANCIEGVSKGFSKTLEVVGVGYKVNVQGKNIVLNVGFSHPVNYELPAGIEASAEGNTKLTISGVDKQLVGEVAAQLRRVRPPEPYKGKGIKYIDEQIRRKAGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CYAA5 (50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NM+ GVS+GFEK+L + GVGYRA  +G  L L++G+S PV MT+P GI V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE +RRK GK+
Sbjct:   69 RTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQGINVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKA 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOPS (50S ribosomal protein L6 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 2
Query:   32 DAQ---SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            DAQ   +R S++    A    TR L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRRK GK+
Sbjct:   48 DAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOPE (50S ribosomal protein L6 OS=Clostridium perfringens GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 2
Query:   32 DAQ---SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            DAQ   +R S++    A    TR L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRRK GK+
Sbjct:   48 DAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CLOP1 (50S ribosomal protein L6 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 2
Query:   32 DAQ---SRLSEMASSIASSFHTRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            DAQ   +R S++    A    TR L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRRK GK+
Sbjct:   48 DAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRRKEGKT 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ACAM1 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 2
Query:   62 SSIASSFH--TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            S IA   H  +RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G+ L+L++G+S+PV +  P+G++V VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++Y DE +RRK GK+
Sbjct:   58 SRIARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEGVQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKA 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEU5 (50S ribosomal protein L6 OS=Pseudomonas stutzeri (strain A1501) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV+GVS+GFE+KLQ+VGVGY+A  +GQVL L+LGFSHPV   +P G+       T I + G DK  +GQ AA IR +R PEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVIGVSQGFERKLQLVGVGYKAQAKGQVLSLALGFSHPVDYELPQGVTAETPSQTDILIKGVDKQLVGQVAAEIRDFRRPEPYKGKGVRYSDEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_DICT6 (50S ribosomal protein L6 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 61/109 (55.96%), Postives = 84/109 (77.06%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR L +NMV+GV++GFEK+L++ G GYRA ++G  L+L +GFSHPV + IP G+ V V++NT+I+V G DK  +GQFAA +R  RP EPYKGKG++Y  E IR+K GK+
Sbjct:   69 TRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLILEVGFSHPVELEIPTGLTVTVQDNTKISVKGIDKELVGQFAAIVRSVRPAEPYKGKGIRYEGEKIRQKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ANAVT (50S ribosomal protein L6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +RTL  NMV GVS+GF+++L++ GVGYRA ++G+ L+L++G+SH V++  PDGI+  VE NT + VSGYDK  +G  AA IR  RPPEPYKGKG++Y  EV+RRK GK+
Sbjct:   68 SRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVSGYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_WOLSU (50S ribosomal protein L6 OS=Wolinella succinogenes GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R L +N+V+G+S GF K+L++ GVGY+AA++G VL L+LGFSHPV   IP+G+++ VE+N  IT+ G DK  IGQ AA IR++RPPEPYKGKGVKY DE I RK GK+ ++
Sbjct:   69 RALANNIVIGLSAGFTKQLEINGVGYKAAVKGSVLELALGFSHPVNYEIPEGVEIAVEKNV-ITIKGSDKQQIGQIAAEIREFRPPEPYKGKGVKYSDETIIRKAGKTSKK 178          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_DESAD7.907e-3256.4850S ribosomal protein L6 OS=Desulfovibrio salexige... [more]
RL6_CYAA57.907e-3259.2650S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CLOPS7.907e-3253.0850S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_CLOPE7.907e-3253.0850S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_CLOP17.907e-3253.0850S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_ACAM17.907e-3257.1450S ribosomal protein L6 OS=Acaryochloris marina (... [more]
RL6_PSEU51.033e-3158.1850S ribosomal protein L6 OS=Pseudomonas stutzeri (... [more]
RL6_DICT61.033e-3155.9650S ribosomal protein L6 OS=Dictyoglomus thermophi... [more]
RL6_ANAVT1.033e-3156.8850S ribosomal protein L6 OS=Anabaena variabilis (s... [more]
RL6_WOLSU1.349e-3158.5650S ribosomal protein L6 OS=Wolinella succinogenes... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
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