EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SYNWW (50S ribosomal protein L6 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +R L  NMV GVS GFEKKL++VGVGYRA ++G+ LV+S+GFSHPV +  P+GI+  V   TRITV G DK  +G  AA IR  R PEPYKGKG+KY +EVIRRK GK+
Sbjct:   68 SRALIANMVQGVSAGFEKKLELVGVGYRAQMQGKKLVISIGFSHPVEVEPPEGIEFEVPAVTRITVKGIDKQLVGNTAAHIRAIRKPEPYKGKGIKYENEVIRRKAGKA 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            RTL  NMV GVS+GFE++L++VGVGYRA+ +G  L+L++G+SHPV +  P GI++ VE N  I VSG DK  +G  AA IR  RPPEPYKGKG++YV E +RRK GKS
Sbjct:   69 RTLVANMVDGVSRGFERRLELVGVGYRASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQVRRKAGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEMY (50S ribosomal protein L6 OS=Pseudomonas mendocina (strain ymp) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV+GVS+GFE+KLQ+VGVGY+A  +GQVL L+LGFSHP+   +P G+       T I + G DK  +GQ AA IR +R PEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVIGVSQGFERKLQLVGVGYKAQAKGQVLNLALGFSHPIDYELPAGVVAETPNQTEILIKGIDKQLVGQVAAEIRDFRRPEPYKGKGVRYADEVVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = 2
Query:   32 DAQSRLSEMASSIASSFHT----------RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            D + +L + A  +A  + T          R    N+V GV+KGFEKKL+++GVGYRAAL+G+ L L+LG+SH V   +P+GI + V + T IT++G D   +GQ AA IR +RPPEPYKGKGVKY DE I RK GK +
Sbjct:   40 DVEVKLEDGAVKVAPRYETKRAQALYGTARAQVANLVAGVTKGFEKKLEIIGVGYRAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_NITHX (50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 2
Query:   32 DAQSRLSEMASSIASSFHT----------RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            D + +L   A  +A  + T          R    N+V GV+KGFEKKL++VGVGYRAAL+G+ L L+LG+SH V   IP+GI + V + T IT++G D   +GQ AA IR +RPPEPYKGKGVKY DE I RK GK +
Sbjct:   40 DVEVKLENGAVKVAPRYETNRAQALYGTARAQVANLVAGVTKGFEKKLEIVGVGYRAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADEFIFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_LISW6 (50S ribosomal protein L6 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+++ V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_LISIN (50S ribosomal protein L6 OS=Listeria innocua GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+++ V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RRK GK+
Sbjct:   68 TRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_GEOSL (50S ribosomal protein L6 OS=Geobacter sulfurreducens GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL +NMVVGV+KGFE+ L++ GVGYRA  +G VL LSLG+SHP+   +P GI V V++ T++ V G DK  +GQ AA IR +R PEPYKGKG+KY DE I RK GK+
Sbjct:   68 TRTLVNNMVVGVTKGFERALEINGVGYRAEAKGDVLNLSLGYSHPINYALPAGIIVEVDKMTKLVVKGIDKELVGQTAAKIRSFRGPEPYKGKGIKYADEKILRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ANASP (50S ribosomal protein L6 OS=Anabaena sp. (strain PCC 7120) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            +RTL  NMV GVS+GF+++L++ GVGYRA ++G+ LVL++G+SH V++  PDGI+  VE NT + VSGYDK  +G  AA +R  RPPEPYKGKG++Y  EV+RRK GK+
Sbjct:   68 SRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PSEPW (50S ribosomal protein L6 OS=Pseudomonas putida (strain W619) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.761e-31
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GVS+GFE+KLQ+VGVGY+A  +G VL L+LGFSHPV   +P GI       T I + G DK  +GQ AA IR +RPPEPYKGKGV+Y DEV+RRK  K +
Sbjct:   68 TRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_SYNWW1.349e-3161.4750S ribosomal protein L6 OS=Syntrophomonas wolfei ... [more]
RL6_SYNJA1.349e-3159.2650S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_PSEMY1.349e-3157.2750S ribosomal protein L6 OS=Pseudomonas mendocina ... [more]
RL6_NITWN1.349e-3149.2850S ribosomal protein L6 OS=Nitrobacter winogradsk... [more]
RL6_NITHX1.349e-3150.7250S ribosomal protein L6 OS=Nitrobacter hamburgens... [more]
RL6_LISW61.349e-3155.0550S ribosomal protein L6 OS=Listeria welshimeri se... [more]
RL6_LISIN1.349e-3155.0550S ribosomal protein L6 OS=Listeria innocua GN=rp... [more]
RL6_GEOSL1.349e-3159.6350S ribosomal protein L6 OS=Geobacter sulfurreduce... [more]
RL6_ANASP1.349e-3156.8850S ribosomal protein L6 OS=Anabaena sp. (strain P... [more]
RL6_PSEPW1.761e-3159.0950S ribosomal protein L6 OS=Pseudomonas putida (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
back to top