EY756359

Overview
NameEY756359
Unique NameEY756359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_METSB (50S ribosomal protein L6 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR++ +N+VVGVSKGFE+KL++ GVGY+AA+ G+ L LSLGFSH V   IPDGI +   + T + +SG DK  +GQ A+ IR  RPPEPYKGKGVKY  E I RK GK +
Sbjct:   68 TRSMVNNLVVGVSKGFERKLEITGVGYKAAVSGKNLQLSLGFSHDVTFPIPDGISIVAAKPTEVAISGIDKRQVGQIASEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_METI4 (50S ribosomal protein L6 OS=Methylacidiphilum infernorum (isolate V4) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            R+L +N V+GV +GF+KKL++ G+G+RAA+EG+ LV++LGFSHPV   IP+GI V V++NT++T+ G DK  +G  AA IR +  PEPYKGKG++Y  EVIRRK GK+ ++
Sbjct:   69 RSLLNNAVMGVHEGFQKKLEINGIGFRAAVEGKKLVMNLGFSHPVVYEIPEGISVKVQDNTKLTIEGIDKCLVGAVAADIRGFYVPEPYKGKGIRYAGEVIRRKAGKTAQK 179          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_MARAV (50S ribosomal protein L6 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSR 415
            TR L +NMV GVS G+E+KLQ+ GVGYRA  +G+ L L+LGFSHPV   +P+G+      NT + + G DK  +GQ AA IR +RPPEPYKGKGV+Y DE +RRK  K +
Sbjct:   68 TRALVNNMVTGVSTGWERKLQLTGVGYRAQAQGKKLNLTLGFSHPVEYELPEGVTAETPSNTEVVIRGIDKQQVGQVAAEIRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CYAP8 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 8801) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TRTL  NMV GVSKGFEK+L + GVGYRA ++G  L L++G+S PV MT+P GI+V VE NT + VSG DK  +G  +A IR  RPPE YKGKG++Y DE +RRK GK+
Sbjct:   68 TRTLVANMVEGVSKGFEKRLSIQGVGYRAQVQGTKLTLNVGYSKPVEMTMPAGIQVAVENNTLVIVSGIDKEIVGNVSAEIRAVRPPEVYKGKGIRYSDEFVRRKAGKT 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CHLTR (50S ribosomal protein L6 OS=Chlamydia trachomatis GN=rplF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            L  NMV GV  GFEK+L+M+GVG+RAA++G +L LS+G SHP +M IP G++V+VE+NT I++ G +K  +G+FAA +R  RPPEPYKGKG++Y +E +RRK GK+
Sbjct:   72 LIANMVKGVHTGFEKRLEMIGVGFRAAVQGSLLDLSIGVSHPTKMPIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CHLTB (50S ribosomal protein L6 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            L  NMV GV  GFEK+L+M+GVG+RAA++G +L LS+G SHP +M IP G++V+VE+NT I++ G +K  +G+FAA +R  RPPEPYKGKG++Y +E +RRK GK+
Sbjct:   72 LIANMVKGVHTGFEKRLEMIGVGFRAAVQGSLLDLSIGVSHPTKMPIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_CHLT2 (50S ribosomal protein L6 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   95 LTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            L  NMV GV  GFEK+L+M+GVG+RAA++G +L LS+G SHP +M IP G++V+VE+NT I++ G +K  +G+FAA +R  RPPEPYKGKG++Y +E +RRK GK+
Sbjct:   72 LIANMVKGVHTGFEKRLEMIGVGFRAAVQGSLLDLSIGVSHPTKMPIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAGKA 177          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_AYWBP (50S ribosomal protein L6 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rplF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKSREE 421
            TR L  NMV GVSKGF+K L++VG+ YRA ++G+ L+LSLGFSHPV + IPD ++V V +NT I + G DK  +G+FAA   K R PEPYKGKG++YV + +R+K GKS ++
Sbjct:   69 TRALLSNMVEGVSKGFQKTLKIVGLAYRAQIKGKQLILSLGFSHPVSVAIPDNLEVVVNQNTEIVIKGIDKQLVGEFAAKNVKLRKPEPYKGKGIRYVGQYVRQKAGKSAKK 180          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_PROM9 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = 2
Query:   89 RTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            R L  NMV GV++GF KKL++VGVG RA ++G+ LV+S G+SHPV M  PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY DE I RK GKS
Sbjct:   69 RALIANMVEGVTQGFSKKLEIVGVGSRAQVKGKNLVVSAGYSHPVEMIPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYHDERILRKAGKS 176          
BLAST of EY756359 vs. ExPASy Swiss-Prot
Match: RL6_ENTFA (50S ribosomal protein L6 OS=Enterococcus faecalis GN=rplF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   86 TRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKGGKS 412
            TR   +NMVVGVS+GF+K L+++GVGYRA ++G  L L++G+SHPV MT P+G+   V  NT++ V G +K  +G+ AA+IR  RPPEPYKGKG++YV E +RRK GK+
Sbjct:   68 TRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEGVTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKT 176          
The following BLAST results are available for this feature:
BLAST of EY756359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_METSB3.924e-3158.1850S ribosomal protein L6 OS=Methylocella silvestri... [more]
RL6_METI43.924e-3154.9550S ribosomal protein L6 OS=Methylacidiphilum infe... [more]
RL6_MARAV3.924e-3155.4550S ribosomal protein L6 OS=Marinobacter aquaeolei... [more]
RL6_CYAP83.924e-3159.6350S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CHLTR3.924e-3156.6050S ribosomal protein L6 OS=Chlamydia trachomatis ... [more]
RL6_CHLTB3.924e-3156.6050S ribosomal protein L6 OS=Chlamydia trachomatis ... [more]
RL6_CHLT23.924e-3156.6050S ribosomal protein L6 OS=Chlamydia trachomatis ... [more]
RL6_AYWBP3.924e-3155.3650S ribosomal protein L6 OS=Aster yellows witches'... [more]
RL6_PROM95.125e-3162.0450S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_ENTFA5.125e-3155.0550S ribosomal protein L6 OS=Enterococcus faecalis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756359 ID=EY756359; Name=EY756359; organism=Citrus sinensis; type=EST; length=584bp
CCACGCGTCCGGGCAGGTGTATTAGCTGATTGATGCTCAAAGCCGCTTAA
GCGAAATGGCTTCTTCTATCGCCTCTTCTTTCCATACCAGGACACTGACC
GACAACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAAT
GGTTGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGA
GTCTTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATAAAA
GTGAATGTGGAGGAAAACACCAGGATCACCGTTAGTGGATATGATAAAAG
CGCAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCCCCAGAAC
CGTACAAGGGAAAAGGAGTGAAATATGTTGATGAAGTTATCAGAAGGAAA
GGAGGGAAAAGCAGGGAAGAAGAAGTAATAGATCTTCGATTGTTTTTTCC
ATTGTCTCATTTTTTTTTTTTTTTTGTTATAAATATGCGTTGGTGAATGT
ACTTAATGCAATTAAAGCAATGCCTTGCAATCTATGAGAGGAATTGATTA
TTTCAAAAGAACAAACTTCCCACACTTTATAACC
back to top