EY756291

Overview
NameEY756291
Unique NameEY756291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.491e-43
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN            VQAIVTGKGP ENLADHL DPVNN
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.491e-43
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN            VQAIVTGKGP ENLADHL DPVNN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.491e-43
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN            VQAIVTGKGP ENLADHL DPVNN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 85/103 (82.52%), Postives = 88/103 (85.44%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN            VQAIVTGKGP ENLADH+ DPVNN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 85/103 (82.52%), Postives = 88/103 (85.44%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN            VQAIVTGKGP ENLADH+ DPVNN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.515e-40
Identity = 85/111 (76.58%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  445 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKN            VQAIVTGKGP ENLADHL DPVNN
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.471e-27
Identity = 89/245 (36.33%), Postives = 115/245 (46.94%), Query Frame = 1
Query:   58 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXV-QAIVTGKGPXENLADHLXDPVNNMPG 783
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKN            V Q+   G GP ENLA HL DP +N  G
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 80/196 (40.82%), Postives = 99/196 (50.51%), Query Frame = 1
Query:  205 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXV-QAIVTGKGPXENLADHLXDPVNNMPG 783
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKN            V Q+   G GP ENLA HL DP +N  G
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIG 235          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 73/192 (38.02%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  211 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDP 765
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN             Q I TG GP +NL  HL DP
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.054e-25
Identity = 64/103 (62.14%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDP 765
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKN             QAIVTG+GP EN   HL DP
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
The following BLAST results are available for this feature:
BLAST of EY756291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2D_SOLLC9.491e-4383.50Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC9.491e-4383.50Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC9.491e-4383.50Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.619e-4282.52Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.619e-4282.52Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA1.515e-4076.58Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.471e-2736.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.626e-2640.82Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC3.623e-2638.02Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_EUGGR1.054e-2562.14Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756291 ID=EY756291; Name=EY756291; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGAAATTCCTCTATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACG
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCATCTG
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTT
GATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGT
TAAGGAAATCAAGAATGGAANGNTGGCTATGTTCTCCATGTTTGGNTTCT
TCGTTCAGGCCATTGTCACCGGCAAGGGACCGNTAGAGAACTTGGCCGAC
CACTTGGNCGACCCTGTCAACAACATGCCTGGGCCTACGCCACCACTTTG
TCCCCGGAAGTGAGCTTCGGTTGATACATTAGTAGCGTGAAATTNGAAAT
GAGAGGATTGGTTATGATTGACTCTATTCAACTGCAAAAA
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