EY756291

Overview
NameEY756291
Unique NameEY756291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.166e-24
Identity = 80/219 (36.53%), Postives = 104/219 (47.49%), Query Frame = 1
Query:  133 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDP 765
            GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN             Q I TG GP +NL  HL DP
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.867e-24
Identity = 81/211 (38.39%), Postives = 105/211 (49.76%), Query Frame = 1
Query:  217 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+KEIKN            +QA+VTG GP +NL DHL DPVNN
Sbjct:   64 SYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 264          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 83/227 (36.56%), Postives = 113/227 (49.78%), Query Frame = 1
Query:  169 GLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D ++  ELK+KE+KN            +Q +VTG GP +NL DH+ DPVNN
Sbjct:   52 GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNN 266          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.515e-19
Identity = 70/191 (36.65%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KE+ N            VQ  VTGKGP ENL  HL DP +N
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.557e-19
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNN 774
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KEI N            +Q  VTGKGP +NL  H+ DP +N
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18
Identity = 73/183 (39.89%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  211 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLAD 750
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKN            VQ+ VTGK P  NL D
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 2 Score: 93.5893 bits (231), Expect = 1.630e-18
Identity = 64/192 (33.33%), Postives = 89/192 (46.35%), Query Frame = 1
Query:  202 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPV 768
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KN             Q + TG+ P  NL+ HL +P+
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPI 351          

HSP 3 Score: 85.1149 bits (209), Expect = 5.798e-16
Identity = 65/188 (34.57%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPV 768
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKN            VQ  V G  P  NLA+HL  P+
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPL 163          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.129e-18
Identity = 85/260 (32.69%), Postives = 111/260 (42.69%), Query Frame = 1
Query:  124 RKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVN 771
            +K+  K+V++  P +      Y G  S   P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+            VQA  TGKGP  N A HL DP++
Sbjct:   44 KKSAKKTVTTDRPLW------YPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.057e-17
Identity = 78/230 (33.91%), Postives = 97/230 (42.17%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVN 771
            P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+            VQA  TGKGP  N A HL DP++
Sbjct:   62 PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 74/225 (32.89%), Postives = 91/225 (40.44%), Query Frame = 1
Query:  211 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLA 747
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+            +QA  TGKGP   LA
Sbjct:   65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of EY756291 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 85/271 (31.37%), Postives = 105/271 (38.75%), Query Frame = 1
Query:  130 TGSKSVSSGSPWYGLDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNXXXXXXXXXXXXVQAIVTGKGPXENLADHLXDPVNNMPG 783
            T   + S+G+   G+   KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+            VQA+ TG+G   +LA    D +NN  G
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNNGKG 279          
The following BLAST results are available for this feature:
BLAST of EY756291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB12_PETHY1.166e-2436.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC9.867e-2438.39Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA6.395e-2336.56Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH2.515e-1936.65Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA9.557e-1935.60Chlorophyll a-b binding protein P4, chloroplastic ... [more]
LH18_EUGGR1.248e-1839.89Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH2.129e-1832.69Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.057e-1733.91Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH1.687e-1532.89Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE2.280e-1231.37Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756291 ID=EY756291; Name=EY756291; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGAAATTCCTCTATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACG
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCATCTG
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTT
GATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGT
TAAGGAAATCAAGAATGGAANGNTGGCTATGTTCTCCATGTTTGGNTTCT
TCGTTCAGGCCATTGTCACCGGCAAGGGACCGNTAGAGAACTTGGCCGAC
CACTTGGNCGACCCTGTCAACAACATGCCTGGGCCTACGCCACCACTTTG
TCCCCGGAAGTGAGCTTCGGTTGATACATTAGTAGCGTGAAATTNGAAAT
GAGAGGATTGGTTATGATTGACTCTATTCAACTGCAAAAA
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