EY756239

Overview
NameEY756239
Unique NameEY756239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_SCHPO (Mediator of RNA polymerase II transcription subunit 7 OS=Schizosaccharomyces pombe GN=med7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   51 ELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            ELR L+R L L+ LEL  ++ + P Q+  +VE+I ++  NLHHL+N  RPHQ+R +LI +LE Q++  +  VE ++    +    L++
Sbjct:  227 ELRFLSRSLMLNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLINDYRPHQSRESLIMLLEKQLKHEESQVELLRTHNRQMTETLEK 314          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_DROME (Mediator of RNA polymerase II transcription subunit 7 OS=Drosophila melanogaster GN=MED7 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   33 NIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 302
            + D +KEL+ LN  L ++ L+L D L+  P    R  +++DISL+F N+HHLLN  RPHQAR TL  ++E+Q   ++Q VE   R ++  +R
Sbjct:   73 HFDRRKELKKLNHSLLVNFLDLIDFLILNPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQ---KRQRVETAARFQKHLER 161          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7B_XENLA (Mediator of RNA polymerase II transcription subunit 7-B OS=Xenopus laevis GN=med7-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR L   + ++ L++ D+L+  P    R  ++EDI L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDIKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_YEAST (Mediator of RNA polymerase II transcription subunit 7 OS=Saccharomyces cerevisiae GN=MED7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   33 NIDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            N  +K +ELR L + L L+ LEL  VL   P  Y R+VE+I  I  N+HHLLN  RPHQ+R +LI +LE Q++ ++  + +I++  ++   +L     TL
Sbjct:  111 NYQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLTSIQDTL 210          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_ASHGO (Mediator of RNA polymerase II transcription subunit 7 OS=Ashbya gossypii GN=MED7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   27 GPNIDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRL 308
            G N  +K KEL  L + L L++LEL  VL   P ++  +VE I  I  N+HHLLN  RPHQ+R +LI +LE Q++ +K+ + +I    ++ Q +L
Sbjct:   94 GNNYQYKIKELHKLLKSLLLNMLELVSVLSVNPERFPDKVEHIRTILFNIHHLLNEYRPHQSRESLIMLLEEQLEHKKEEIANIHAICDKVQAKL 188          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_XENTR (Mediator of RNA polymerase II transcription subunit 7 OS=Xenopus tropicalis GN=med7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR L   + ++ L++ D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7A_XENLA (Mediator of RNA polymerase II transcription subunit 7-A OS=Xenopus laevis GN=med7-A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR L   + ++ L++ D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_PICST (Mediator of RNA polymerase II transcription subunit 7 OS=Pichia stipitis GN=MED7 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   48 KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRL 308
            KEL  L   L L+ LEL  +    PSQY  +++DISLI  N++HLLN+ RPHQ+R +LI +L  QI  ++ ++  +++   E +++L
Sbjct:  126 KELHKLMDSLLLNFLELIGLASIDPSQYESKIKDISLILININHLLNTYRPHQSRESLIMLLRKQIDAKRASINQVEKVCSEVKQKL 212          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_EMENI (Mediator of RNA polymerase II transcription subunit 7 OS=Emericella nidulans GN=med7 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   24 PGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            P   ++    L  +++ L L+ LE   +L   P Q+  +VEDI  +F N HHLLN  RPHQAR +LI ++E Q+ R K  ++ + + +EE    L +
Sbjct:  118 PAQPLNHAYYLLKISKSLLLNFLEFVGILSVAPEQFEPKVEDIRNLFINAHHLLNLYRPHQARESLIMMMEAQLARTKDEIQQMDKLKEEVNAVLDQ 214          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_ASPOR (Mediator of RNA polymerase II transcription subunit 7 OS=Aspergillus oryzae GN=med7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   24 PGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            P   ++    L  +++ L L+ LE   +L   P Q+  +VED+  +F N HHLLN  RPHQAR +LI ++E Q+ R ++ ++ + + +EE    L++
Sbjct:  120 PSQPLNHAYYLLKISKSLLLNFLEFVGILSVAPEQFESKVEDLRNLFINAHHLLNLYRPHQARESLILMMEEQLSRTREEIQQMDKLKEEITGALEQ 216          
The following BLAST results are available for this feature:
BLAST of EY756239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MED7_SCHPO9.013e-1338.64Mediator of RNA polymerase II transcription subuni... [more]
MED7_DROME1.177e-1242.39Mediator of RNA polymerase II transcription subuni... [more]
MED7B_XENLA1.177e-1236.36Mediator of RNA polymerase II transcription subuni... [more]
MED7_YEAST1.537e-1240.00Mediator of RNA polymerase II transcription subuni... [more]
MED7_ASHGO1.537e-1241.05Mediator of RNA polymerase II transcription subuni... [more]
MED7_XENTR2.008e-1235.35Mediator of RNA polymerase II transcription subuni... [more]
MED7A_XENLA2.008e-1235.35Mediator of RNA polymerase II transcription subuni... [more]
MED7_PICST9.965e-1240.23Mediator of RNA polymerase II transcription subuni... [more]
MED7_EMENI1.700e-1136.08Mediator of RNA polymerase II transcription subuni... [more]
MED7_ASPOR3.787e-1134.02Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756239 ID=EY756239; Name=EY756239; organism=Citrus sinensis; type=EST; length=608bp
CCACGCGTCCGTCAGCTTTACTTCCAGGACCAAATATTGATTTCAAGAAA
GAACTGAGGTCACTGAACAGAGAATTGCAGCTGCACATATTGGAACTTTC
TGATGTCCTTGTTGAGAGACCATCTCAATATGCCAGGAGAGTGGAAGACA
TATCTCTTATATTCAAGAACTTGCATCATCTTCTCAATTCATTACGTCCT
CATCAGGCTAGAGCAACATTAATACATATCCTAGAACTTCAGATACAGCG
CCGTAAACAAGCTGTGGAGGATATAAAGAGGCGGAGAGAAGAAGCACAAC
GACGTCTCAAGGAGTCCCTTGGAACCTTAGAGGGACAGTAGCGCATTTGA
GAACTGTATCTATACTGACGGGAGATTCTACTGGCAAGATTGCTAGAAGT
TTCTGTTATCTAATGTCTGGAGATAGTGAATATTGATAACAAGTACAGTT
TTGCAATCCGGGAGTCTTCATATATTGTAGGCAGCTTCAATTGTGAAAAA
TTACATTCTGTGCATTAGTAGTTTGTCTTGGAAGATGGTACTGATATATT
ATCTAATATTGNTAGCATGTTTATTATCAAACATAAATTTGACCAAAAAA
AAAAAAAA
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