EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.066e-27
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSD 241
            +VFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE+GW+IKVKPS+PS+
Sbjct:   71 VVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +V+VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L+  P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:   38 VVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +V+VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L+  P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:   38 VVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SCHPO (Putative glycine cleavage system H protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPBP19A11.01 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.191e-24
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:    5 ASASWRLVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 304
            A+A   +VFVELPE   +V  G G G VESVK+ SDV SP+SG V  +N  L  +P  V+SSP EEGW+ K+K SSP +L+SL++ ++Y +FC+EE+A+H
Sbjct:   70 ANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEEDASH 169          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_TERTT (Glycine cleavage system H protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.300e-22
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 295
            +VFVE PE G+ V  G   GVVESVKA SD+ SP++GEVI VN  L + P  VN SPY+EGW  KVKPS  S+L+  MD +AY K  E+++
Sbjct:   40 VVFVETPEVGSQVSAGEEAGVVESVKAASDIYSPVTGEVIAVNELLEEAPETVNESPYDEGWFFKVKPSDVSELDGAMDSEAYVKSVEDDS 130          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+ +P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:   37 VVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+ +P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:   37 VVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO7I (Glycine cleavage system H protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++EVN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVEVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SYMTH (Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.691e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 289
            +VFVELPE G  +KQ   FGVVESVK  SD+  P SG+V+EVN+KL  +P L+N  PY EGW++K++ S+P++L++L+D  AY  F +E
Sbjct:   39 VVFVELPEVGRELKQNEQFGVVESVKTVSDLYCPASGKVVEVNTKLESSPELINQDPYGEGWILKLELSNPAELDNLLDAAAYDAFTKE 127          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALAR (Glycine cleavage system H protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.691e-22
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY +GW+ K+K S+ S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYADGWIFKIKASNESELESLLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_FLAAU1.066e-2776.71Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_ANASK3.209e-2456.67Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_ANAD23.209e-2456.67Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_SCHPO4.191e-2452.00Putative glycine cleavage system H protein, mitoch... [more]
GCSH_TERTT2.300e-2254.95Glycine cleavage system H protein OS=Teredinibacte... [more]
GCSH_VIBVY5.123e-2251.11Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU5.123e-2251.11Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_ECO7I5.123e-2253.33Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_SYMTH6.691e-2252.81Glycine cleavage system H protein OS=Symbiobacteri... [more]
GCSH_SALAR6.691e-2252.22Glycine cleavage system H protein OS=Salmonella ar... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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