EY756236 | Citrus Genome Database

Overview


Name	EY756236
Unique Name	EY756236
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	450

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_CARHZ (Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.491e-21
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VF+ELP  G  +  G  FGVVESVKA SD+ +P+SG+V+EVN ++ ++P LVN  PY +GW+IKV+ S+ ++L+ L+ P+ Y K  EEE
Sbjct:   39 IVFIELPGVGDEISAGDSFGVVESVKAASDLYAPVSGKVVEVNEEVIESPQLVNEDPYGKGWMIKVEISNEAELDELLSPEDYEKLLEEE 128

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHISS (Glycine cleavage system H protein OS=Shigella sonnei (strain Ss046) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHIFL (Glycine cleavage system H protein OS=Shigella flexneri GN=gcvH PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHIF8 (Glycine cleavage system H protein OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHIBS (Glycine cleavage system H protein OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHIB3 (Glycine cleavage system H protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALTY (Glycine cleavage system H protein OS=Salmonella typhimurium GN=gcvH PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALTI (Glycine cleavage system H protein OS=Salmonella typhi GN=gcvH PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALSV (Glycine cleavage system H protein OS=Salmonella schwarzengrund (strain CVM19633) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALPK (Glycine cleavage system H protein OS=Salmonella paratyphi A (strain AKU_12601) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

The following BLAST results are available for this feature:

BLAST of EY756236 vs. ExPASy Swiss-Prot

BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435


Match Name	E-value	Identity	Description
GCSH_CARHZ	1.491e-21	50.00	Glycine cleavage system H protein OS=Carboxydother...	[more]
GCSH_SHISS	2.543e-21	52.22	Glycine cleavage system H protein OS=Shigella sonn...	[more]
GCSH_SHIFL	2.543e-21	52.22	Glycine cleavage system H protein OS=Shigella flex...	[more]
GCSH_SHIF8	2.543e-21	52.22	Glycine cleavage system H protein OS=Shigella flex...	[more]
GCSH_SHIBS	2.543e-21	52.22	Glycine cleavage system H protein OS=Shigella boyd...	[more]
GCSH_SHIB3	2.543e-21	52.22	Glycine cleavage system H protein OS=Shigella boyd...	[more]
GCSH_SALTY	2.543e-21	52.22	Glycine cleavage system H protein OS=Salmonella ty...	[more]
GCSH_SALTI	2.543e-21	52.22	Glycine cleavage system H protein OS=Salmonella ty...	[more]
GCSH_SALSV	2.543e-21	52.22	Glycine cleavage system H protein OS=Salmonella sc...	[more]
GCSH_SALPK	2.543e-21	52.22	Glycine cleavage system H protein OS=Salmonella pa...	[more]

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Properties


Property Name	Value
Genbank description	CS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA