EY756236 | Citrus Genome Database

Overview


Name	EY756236
Unique Name	EY756236
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	450

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOSM (Glycine cleavage system H protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOSE (Glycine cleavage system H protein OS=Escherichia coli (strain SE11) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLU (Glycine cleavage system H protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLI (Glycine cleavage system H protein OS=Escherichia coli (strain K12) GN=gcvH PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLC (Glycine cleavage system H protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOL6 (Glycine cleavage system H protein OS=Escherichia coli O6 GN=gcvH PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOL5 (Glycine cleavage system H protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOK1 (Glycine cleavage system H protein OS=Escherichia coli O1:K1 / APEC GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOHS (Glycine cleavage system H protein OS=Escherichia coli O9:H4 (strain HS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECODH (Glycine cleavage system H protein OS=Escherichia coli (strain K12 / DH10B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

The following BLAST results are available for this feature:

BLAST of EY756236 vs. ExPASy Swiss-Prot

BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435


Match Name	E-value	Identity	Description
GCSH_ECOSM	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOSE	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLU	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLI	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLC	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOL6	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOL5	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOK1	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOHS	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECODH	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA