EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ACICJ (Glycine cleavage system H protein OS=Acidiphilium cryptum (strain JF-5) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 2
Query:    8 SASWRLVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 280
            SA   +VFVELPETG  V  G    VVESVKA SDV +P++G V E N  L   PG+VN+      W  ++     +  ++L+    Y  F
Sbjct:   30 SALGDVVFVELPETGRHVDAGEACAVVESVKAASDVYAPLAGTVTEANGALADDPGMVNAQAESGAWFFRMTLDDRAAFDALLTADDYQAF 120          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH5_AQUAE (Glycine cleavage system H protein 5 OS=Aquifex aeolicus GN=gcvH5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 2
Query:    5 ASASWRLVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLM 256
            A+ + RLV     + G +VK+      +ES K    V SP  GE++EVN  L   P LVN  PY +GW+ KVKP++P + +S++
Sbjct:   43 AAMAGRLVAYTPKKVGKAVKKDKSVATIESGKWVGPVPSPFDGEIVEVNEALKGNPALVNDDPYGQGWIAKVKPANPEEAKSVL 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH1_PSEAE (Glycine cleavage system H protein 1 OS=Pseudomonas aeruginosa GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 277
            +VFV+LPE G     G    V+ESVKA S++  P+ GEV+ +N  L   P LVN  P  E W  + +P+     E L+D  AY +
Sbjct:   36 VVFVQLPELGEHAA-GSEVAVLESVKAASNILMPLDGEVVAINDALPDAPELVNQDPLGEAWFFRFRPADAGAWEKLLDQAAYDR 119          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH2_SULTO (Probable glycine cleavage system H protein 2 OS=Sulfolobus tokodaii GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   20 RLVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQA 268
            ++V V L + G  V++G     +ES K    V +P SGE+I+VN  + + P LVN  PY +GWL+K+K ++P +L+ L+   A
Sbjct:   47 KVVKVRLKKKGTKVERGKPVATMESGKWAGPVPAPASGEIIDVNPDVEKNPVLVNQDPYGKGWLVKMKVNNPEELKQLVTGSA 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH1_PSESM (Glycine cleavage system H protein 1 OS=Pseudomonas syringae pv. tomato GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 277
            +VFV+LPE  A   Q     VVESVKA S +N P+ GEV+EVN+ L  TP  VN      GW  +  P     +  L+D  AY +
Sbjct:   36 VVFVQLPELQAYA-QHAEVSVVESVKAASSINMPLDGEVVEVNAVLDATPERVNEDALGAGWFFRFIPQDAYAIHGLLDQDAYDR 119          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_ACICJ6.277e-1240.66Glycine cleavage system H protein OS=Acidiphilium ... [more]
GCSH5_AQUAE8.198e-1239.29Glycine cleavage system H protein 5 OS=Aquifex aeo... [more]
GCSH1_PSEAE1.398e-1140.00Glycine cleavage system H protein 1 OS=Pseudomonas... [more]
GCSH2_SULTO6.940e-1138.55Probable glycine cleavage system H protein 2 OS=Su... [more]
GCSH1_PSESM6.940e-1142.35Glycine cleavage system H protein 1 OS=Pseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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