EY756236 | Citrus Genome Database

Overview


Name	EY756236
Unique Name	EY756236
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	450

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECOBW (Glycine cleavage system H protein OS=Escherichia coli (strain K12 / BW2952) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO8A (Glycine cleavage system H protein OS=Escherichia coli O8 (strain IAI1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO81 (Glycine cleavage system H protein OS=Escherichia coli O81 (strain ED1a) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO5E (Glycine cleavage system H protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO57 (Glycine cleavage system H protein OS=Escherichia coli O157:H7 GN=gcvH PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO55 (Glycine cleavage system H protein OS=Escherichia coli (strain 55989 / EAEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO45 (Glycine cleavage system H protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO27 (Glycine cleavage system H protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ECO24 (Glycine cleavage system H protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYETLLEDE 129

[Close]

BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBHB (Glycine cleavage system H protein OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 2

Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LP+    V+ G  F +VESVKA SD+ SPI+GEV+E+N +L  +P L+N  PYE GW++KVK S PS+L+ L D + Y    EEE
Sbjct:   37 VVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPITGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126

The following BLAST results are available for this feature:

BLAST of EY756236 vs. ExPASy Swiss-Prot

BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435


Match Name	E-value	Identity	Description
GCSH_ECOBW	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO8A	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO81	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO5E	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO57	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO55	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO45	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO27	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECO24	2.543e-21	52.22	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_VIBHB	3.321e-21	51.11	Glycine cleavage system H protein OS=Vibrio harvey...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA