EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHIDS (Glycine cleavage system H protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDVLSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SALPB (Glycine cleavage system H protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYVGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 289
            +VFV+LPE G+ V  G    V ESVKA SD+ +PISGE+I VN++L  +P LVNS+PY +GWL  +K S  S+L+SL+D +AY    EE
Sbjct:   40 MVFVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVNAELESSPELVNSAPYTDGWLFSIKASDESELDSLLDAEAYLATIEE 128          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBPA (Glycine cleavage system H protein OS=Vibrio parahaemolyticus GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LP+    V+ G  F +VESVKA SD+ SP++GEV+E+N +L  +P L+N  PYE GW++KVK S PS+L+ L D + Y    EEE
Sbjct:   37 VVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPVTGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SYNR3 (Glycine cleavage system H protein OS=Synechococcus sp. (strain RCC307) GN=gcvH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.664e-21
Identity = 42/84 (50.00%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 274
            +VFVELPE GAS+++G  FG VESVKA  ++ +P+SG V+  N  +  TP L+ + PY+EGWL+K+ P+ PS +E LMD  +Y+
Sbjct:   40 IVFVELPEVGASIEKGSSFGTVESVKAVEEMYAPVSGTVVAANQAVIDTPELLQNDPYQEGWLLKITPADPSQMEQLMDATSYS 123          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.398e-21
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPETG  +  G  FGV+ESVKA SD+  P+SGE+I VN  L   P  VN +PYE+GW+IK+K + P  LESL+D  AY      E
Sbjct:   40 VVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVNESLEDAPETVNDNPYEDGWIIKLKLAEPEALESLLDATAYDALVSAE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_MAGSM (Glycine cleavage system H protein OS=Magnetococcus sp. (strain MC-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.648e-20
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 286
            +VFVELP+   +++ GG FGVVESVKA SD+ SPI+G+VI  N  L + P LVN  PY +GW++++KP  P+ +++L+  QAYT + E
Sbjct:   38 VVFVELPQVEDTLQMGGTFGVVESVKAASDLFSPITGQVIATNPDLAEAPELVNEDPYGKGWMLRLKPEDPAQMDALLTAQAYTAWLE 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ERWCT (Glycine cleavage system H protein OS=Erwinia carotovora subsp. atroseptica GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.648e-20
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VF++LPE G  V  G    V ESVKA SD+ +PISGEV+EVN  L  +P LVNS+PY +GWL ++K S  SDL+ L+D + Y    EE+
Sbjct:   40 MVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVNEDLENSPELVNSAPYTDGWLFRIKISDESDLDELLDAEGYQASLEED 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_XANP2 (Glycine cleavage system H protein OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 286
            +VFVELPE G  V +GG   VVESVKA S+V +P+SGEV+EVNS+L   PGLVN +P  +GW +K+K S+P++L+ L++  AY  F +
Sbjct:   35 VVFVELPEIGKVVTKGGEAAVVESVKAASEVYAPLSGEVVEVNSELEGAPGLVNEAPEGKGWFMKLKLSNPAELDELLNEHAYKDFLD 122          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_RHORT (Glycine cleavage system H protein OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 289
            +VFVELPE G  +++GG   VVESVKA S+V SP+SGEV+E N  L + PG VN+    +GW  KV+ S P++L+ LMD +AY  F  E
Sbjct:   36 VVFVELPEIGREIERGGDAAVVESVKAASEVYSPVSGEVVEANDSLPEAPGQVNTDALGDGWFFKVRLSEPAELDELMDQEAYDAFVGE 124          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_SHIDS3.321e-2152.22Glycine cleavage system H protein OS=Shigella dyse... [more]
GCSH_SALPB3.321e-2152.22Glycine cleavage system H protein OS=Salmonella pa... [more]
GCSH_YERE84.337e-2152.81Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_VIBPA4.337e-2150.00Glycine cleavage system H protein OS=Vibrio paraha... [more]
GCSH_SYNR35.664e-2150.00Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_CHRSD7.398e-2153.33Glycine cleavage system H protein OS=Chromohalobac... [more]
GCSH_MAGSM1.648e-2050.00Glycine cleavage system H protein OS=Magnetococcus... [more]
GCSH_ERWCT1.648e-2051.11Glycine cleavage system H protein OS=Erwinia carot... [more]
GCSH_XANP22.152e-2053.41Glycine cleavage system H protein OS=Xanthobacter ... [more]
GCSH_RHORT2.152e-2051.69Glycine cleavage system H protein OS=Rhodospirillu... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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