EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_RABIT (Glycine cleavage system H protein, mitochondrial OS=Oryctolagus cuniculus GN=GCSH PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 280
            +V+  LPE G  +K+   FG +ESVKA S++ SP+SGEV E+N  L + PGLVN S YE+GWLIK+  S+PS+L+ LM  +AY K+
Sbjct:   82 VVYCSLPEVGTKLKKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKY 167          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPL (Glycine cleavage system H protein OS=Legionella pneumophila (strain Lens) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 295
            +VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:   35 MVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPH (Glycine cleavage system H protein OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 295
            +VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:   35 MVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPC (Glycine cleavage system H protein OS=Legionella pneumophila (strain Corby) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 295
            +VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:   35 MVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPA (Glycine cleavage system H protein OS=Legionella pneumophila (strain Paris) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 295
            +VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:   35 MVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP3 (Glycine cleavage system H protein OS=Klebsiella pneumoniae (strain 342) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LPE GA+V+ G    V ESVKA SD+ +PISGE++ VN +L  +P LVNS PY +GW+ K+K S  + + +L+D  AY    E+E
Sbjct:   40 MVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDATAYEALLEDE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBSL (Glycine cleavage system H protein OS=Vibrio splendidus (strain LGP32) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFV+LP+T   ++ G  F +VESVKA SD+ +PISGE++E+N +L  +P L+N  PYE GW++KVK S  S+L +L D + Y    EE+
Sbjct:   37 VVFVDLPDTEDEIEAGESFSLVESVKAASDIYAPISGEIVEINEELEDSPELINEEPYEGGWIVKVKMSDASELNNLKDAEEYLSSVEED 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_SHEAM (Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L  +P LVNS  Y +GW  ++KPS  S+L+SL+D + Y    +EE
Sbjct:   40 MVFVELPEVGDTVSAGEDCAVAESVKAASDIYAPISGEVIAVNESLEDSPELVNSDAYGDGWFFRIKPSDESELDSLLDAEGYQAVIDEE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_RAT (Glycine cleavage system H protein, mitochondrial OS=Rattus norvegicus GN=Gcsh PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 280
            +V+  LPE G  +K+   FG +ESVKA S++ SP+SGEV EVN  L + PGLVN S YE+GWLIK+  S PS+L+ LM  +AY K+
Sbjct:   79 VVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKY 164          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_MOUSE (Glycine cleavage system H protein, mitochondrial OS=Mus musculus GN=Gcsh PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 280
            +V+  LPE G  +K+   FG +ESVKA S++ SP+SGEV EVN  L + PGLVN S YE+GWLIK+  S PS+L+ LM  +AY K+
Sbjct:   79 VVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKY 164          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_RABIT2.152e-2052.33Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_LEGPL2.152e-2052.75Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPH2.152e-2052.75Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPC2.152e-2052.75Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPA2.152e-2052.75Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_KLEP32.152e-2048.89Glycine cleavage system H protein OS=Klebsiella pn... [more]
GCSH_VIBSL2.811e-2047.78Glycine cleavage system H protein OS=Vibrio splend... [more]
GCSH_SHEAM2.811e-2052.22Glycine cleavage system H protein OS=Shewanella am... [more]
GCSH_RAT2.811e-2053.49Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_MOUSE2.811e-2053.49Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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