EY756236

Overview
NameEY756236
Unique NameEY756236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 289
            +VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   40 MVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_THET2 (Glycine cleavage system H protein OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +V+VELPE G  V++G    VVESVK  SD+ +P++GE++EVN  L +TP LVN  PY EGW+ ++KP    DL+ L+D + Y +  E E
Sbjct:   38 VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAEGYQEVLESE 127          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE G+SV+ G  FG +ESVKA SD+ SP+SGEV EVN+ L ++P  VN  PY EGWL++V+ S   D   L+ P+ Y +  EEE
Sbjct:   39 VVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVNTSLEESPEKVNEDPYGEGWLLRVRLSEEPD---LLSPEEYARRLEEE 125          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_PECCP (Glycine cleavage system H protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VF++LPE G  V  G    V ESVKA SD+ +PISGE++EVN  L  +P LVNS+PY +GWL +++ S  SDL+ L+D + Y    EE+
Sbjct:   40 MVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEIVEVNDDLESSPELVNSAPYADGWLFRIRISDESDLDELLDAEGYQASLEED 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_ALTMD (Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELP+ G +V  G    V ESVKA SDV +PISGEV+EVN  L  +P LVNS PY +GWL K+K    +++E L+D + Y    +EE
Sbjct:   40 MVFVELPDVGDAVSTGDDICVAESVKAASDVYAPISGEVVEVNEDLEDSPELVNSDPYGDGWLFKIKADDAAEVEGLLDAEGYENSIDEE 129          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_THEMA (Glycine cleavage system H protein OS=Thermotoga maritima GN=gcvH PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +V+V+LPE G  VK+G     +ESVKA +DV +P+SG+++EVN KL   P L+N  P  EGWL K++ S   +LE L+D QAY +FC +E
Sbjct:   35 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_CHRVO (Glycine cleavage system H protein OS=Chromobacterium violaceum GN=gcvH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 277
            +VFVELP+ GAS+ +    GVVESVKA SDV  PI+GEV+ VN +L   P L NS PY +GW  K+KP++ +DL  LMD  AY K
Sbjct:   40 IVFVELPKVGASLAKDEQAGVVESVKAASDVYCPIAGEVLAVNEELEGEPELANSDPYGDGWFFKIKPANAADLNGLMDAAAYAK 124          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of EY756236 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   23 LVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 292
            +VFVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
The following BLAST results are available for this feature:
BLAST of EY756236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GCSH_YERP34.795e-2049.44Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_THET24.795e-2047.78Glycine cleavage system H protein OS=Thermus therm... [more]
GCSH_RUBXD4.795e-2053.33Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_PECCP4.795e-2048.89Glycine cleavage system H protein OS=Pectobacteriu... [more]
GCSH_ALTMD4.795e-2051.11Glycine cleavage system H protein OS=Alteromonas m... [more]
GCSH_THEMA6.263e-2048.89Glycine cleavage system H protein OS=Thermotoga ma... [more]
GCSH_CHRVO6.263e-2055.29Glycine cleavage system H protein OS=Chromobacteri... [more]
GCSH_VIBCM8.179e-2048.89Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH8.179e-2048.89Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC38.179e-2048.89Glycine cleavage system H protein OS=Vibrio choler... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756236 ID=EY756236; Name=EY756236; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGCATCTTGGAGACTAGTGTTTGTGGAGCTGCCAGAAACTG
GTGCCTCAGTCAAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAA
GCAACCAGTGACGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAA
CTCCAAGCTCACCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAG
AAGGATGGCTGATAAAGGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCC
TTGATGGATCCACAGGCTTACACGAAATTTTGCGAAGAAGAAAATGCAGC
TCATTAGAATCTTCACACTGTTTCATTTTCTTTTCCCAAAACATATTAAT
AAATCTCTTTGTTTTACTCGCTATTTGTGTTGTAATTATGCATCTTCATG
TAATTAAGACCCATTTCTCCTTTCANNNNAAAAAAAAAAATAAAAAAAAA
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