EY755896

Overview
NameEY755896
Unique NameEY755896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13289 contig Csv1_Contig13289:1..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: GELS_HALRO (Gelsolin, cytoplasmic OS=Halocynthia roretzi PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 58/199 (29.15%), Postives = 84/199 (42.21%), Query Frame = 2
Query:   26 ESCNTGRVR--QVVAVATSLNSSECFLLQSGSSMLTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEV-YNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEP-CFCTTFFSWDPT 610
            +S   GR R  +V A ++ LNS++ FLL + S    W G  +   + Q A   A  LK     +   E  E + FW  LGG+  Y   +    +  +P LF  S   G F  EE+  N+ Q                ++VW+G+  + +EK S      NY+   T   G S  +P     +G EP  F   F  WD T
Sbjct:  517 QSFFAGRCRAVEVPAKSSHLNSNDAFLLITPSGSYIWVGKGAVESEIQGAKDTAGILKIS-KYEIINENQEPNEFWTALGGQSDYWRDEREEGVPVEPRLFEMSNATGNFIAEEINSNYVQSDLNPDSIMMLDAWNYIYVWIGKEANQEEKMSFKSLVDNYV--KTDGSGRSKDIPREVFDQGKEPLSFTGHFLGWDKT 712          
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: GELS_RAT (Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.146e-12
Identity = 57/200 (28.50%), Postives = 89/200 (44.50%), Query Frame = 2
Query:   29 SCNTGRVRQVVAVATSLNSSECFLLQSGSSMLTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGKFEVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 604
            S    R  +V+  A +LNS++ F+L++ S+   W G  ++  ++  A ++ + L+        +EG+E   FW  LGGK +Y   + SP +         P LF  S   G+F +EEV     Q               +VFVWVG+    +EK  A    + YI+  T       + P+  V +G E P F   F  WD
Sbjct:  570 SSGATRAVEVMPKAGALNSNDAFVLKTPSAAYLWVGTGASDAEKTGALELLKVLRAQHV--QVEEGSEPDGFWEALGGKTAY---RTSPRLKDKKMDAHPPRLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE--TDPANRDRRTPITVVRQGFEPPSFVGWFLGWD 762          
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: GELS_MOUSE (Gelsolin OS=Mus musculus GN=Gsn PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 57/200 (28.50%), Postives = 90/200 (45.00%), Query Frame = 2
Query:   29 SCNTGRVRQVVAVATSLNSSECFLLQSGSSMLTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGKFEVEEV-YNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 604
            S    R  +V+  + +LNS++ F+L++ S+   W G  ++  ++  A ++ + L+        +EG+E  AFW  LGGK +Y   + SP +         P LF  S   G+F +EEV     Q               +VFVWVG+    +EK  A    + YI+  T       + P+  V +G E P F   F  WD
Sbjct:  570 SSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLKVLRSQHV--QVEEGSEPDAFWEALGGKTAY---RTSPRLKDKKMDAHPPRLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE--TDPANRDRRTPITVVRQGFEPPSFVGWFLGWD 762          
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: GELS_HUMAN (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 57/200 (28.50%), Postives = 87/200 (43.50%), Query Frame = 2
Query:   29 SCNTGRVRQVVAVATSLNSSECFLLQSGSSMLTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGKFEVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 604
            S    R  +V+  A +LNS++ F+L++ S+   W G  ++  ++  A ++   L+         EG+E   FW  LGGK +Y   + SP +         P LF  S   G+F +EEV     Q               +VFVWVG+    +EK  A    + YI+  T       + P+  V +G E P F   F  WD
Sbjct:  572 SAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPV--QVAEGSEPDGFWEALGGKAAY---RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE--TDPANRDRRTPITVVKQGFEPPSFVGWFLGWD 764          
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: VILB_DICDI (Protovillin OS=Dictyostelium discoideum GN=vilB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 60/228 (26.32%), Postives = 107/228 (46.93%), Query Frame = 2
Query:   20 GPESCNTGRVRQVVAVATSLNSSECFLLQSGSSMLT--WHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQS------YTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPC-FCTTFFSWDPTKATVQGNSFQKKVALLFGASHA 676
            G E  N   + QV    +SL+S++ F+L +  + ++  W G  S  ++++ A +++  +  G   +   EG E+S FW  L    S      Y ++  + E  +   LF  S N G F+V E+++FSQ               ++FVWVG+     EK  A E    YI  A +        P++ + +G EP  F   F +W   K   Q +S++ K++ + G++++
Sbjct:  599 GTEPINIHSI-QVEKAISSLDSNDSFILVNFKNTISYIWVGKYS--DEKEAALQISSNVFTGYNFQLIDEGDETSEFWESLETNSSLSLLKDYYTQLRTVEQEKKTRLFQCSNNSGVFKVFEIHDFSQDDLDSDDVMILDNQKQIFVWVGKESSDTEKLMANETALEYIMNAPTHR---RDDPIFTIQDGFEPHEFTFNFHAWQVNK--TQQDSYKSKLSAILGSNNS 818          
BLAST of EY755896 vs. ExPASy Swiss-Prot
Match: GELS_BOVIN (Gelsolin OS=Bos taurus GN=GSN PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 57/200 (28.50%), Postives = 88/200 (44.00%), Query Frame = 2
Query:   29 SCNTGRVRQVVAVATSLNSSECFLLQSGSSMLTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGKFEVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 604
            S    R  +V+  A +LNS++ F+L++ S+   W G  ++  ++  A ++   L+         EG+E  +FW  LGGK +Y   + SP +         P LF  S   G+F +EEV     Q               +VFVWVG+    +EK  A    + YI+  T       + P+  V +G E P F   F  WD
Sbjct:  521 SSGATRAVEVMPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGALELLRVLRAQPV--QVAEGSEPDSFWEALGGKAAY---RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE--TDPANRDRRTPITVVKQGFEPPSFVGWFLGWD 713          
The following BLAST results are available for this feature:
BLAST of EY755896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GELS_HALRO2.409e-1229.15Gelsolin, cytoplasmic OS=Halocynthia roretzi PE=1 ... [more]
GELS_RAT3.146e-1228.50Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1[more]
GELS_MOUSE4.109e-1228.50Gelsolin OS=Mus musculus GN=Gsn PE=1 SV=3[more]
GELS_HUMAN4.109e-1228.50Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1[more]
VILB_DICDI7.009e-1226.32Protovillin OS=Dictyostelium discoideum GN=vilB PE... [more]
GELS_BOVIN7.009e-1228.50Gelsolin OS=Bos taurus GN=GSN PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-B06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755896 ID=EY755896; Name=EY755896; organism=Citrus sinensis; type=EST; length=926bp
ACTGGTCGCCTGAGGTACCGGACCGGAATCCTGCAATACAGGCCGCGTCC
GGCAAGTTGTTGCGGTGGCAACATCACTGAACTCCTCTGAGTGTTTCCTT
CTGCAATCTGGCTCTTCAATGCTCACATGGCATGGAAATCAAAGTACCTT
TGAGCAGCAGCAATTAGCCGCAAAAGTTGCCGAATTTTTGAAGCCTGGAG
TTGCAATAAAACATGCTAAAGAAGGGACTGAGAGCTCAGCCTTCTGGTTT
CCACTTGGGGGAAAACAAAGTTACACCAGCAAAAAAGTTTCTCCAGAGAT
TGTCAGAGATCCTCACTTGTTCACATTTTCATTTAATAAAGGAAAATTTG
AGGTTGAGGAAGTTTACAACTTTTCTCAAGATGATCTATTGACAGAGGAT
ATATTGATACTCGACACGCATGCAGAAGTGTTTGTTTGGGTTGGTCAGTC
CGTAGACTCCAAAGAAAAGCAAAGTGCTTTTGAATTTGGCCAGAACTACA
TAGACATGGCCACATCTCTGGAGGGTTTATCTCCAAAAGTTCCACTATAC
AAAGTCACCGAAGGAAATGAGCCATGTTTCTGCACAACATTCTTTTCATG
GGATCCAACAAAAGCTACAGTTCAGGGAAACTCATTCCAAAAGAAAGTGG
CATTACTCTTTGGGGCAAGTCATGCTGCAGAGGATAAGTCCCATGCAAAT
CAGGGAGGGCCAACTCAAAGGGCTTCAGCTTTAGCTGCCTTATCCTCTGC
TTTTATCCATCTTCTGAGAGATCACCAGTCCGTCCCATGATAGGCCAAAT
GGTTCAAATCAAGGGGGGCCAACTCAAAGACTTCGGTTTTGGCTGCCTAT
CCTCTGCATTTAATCATCGCAGGAACTAAGGCTCCCGTTCAAGACCTCTG
GCTCANGTCAAGATCACAAAAGCTGC
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