EY755895

Overview
NameEY755895
Unique NameEY755895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755895 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-14
Identity = 57/230 (24.78%), Postives = 96/230 (41.74%), Query Frame = 1
Query:   85 SLYASGRTTGIVPDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG--------------------------------YSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTISAVEKSYELPDGQVITIGAERFRCP*VLFQPSMIGME-------SAGIHETTYNSLMKCDVDIMKDLDGIIVLTGGSALFPGIADRMSK*IPALAPSSMKIKVVA 657
            S +A+G+   +V D G  V+   P+ +G  L     R   AG  L   + K+L  RG                                +SFT      I+ + K+ +  +    +  L    +  A ++ +E P G   T GA+R      LF+PS    +       + G+ E   +++   +VD+   L   IV+TGG +L  G++DR+SK +   A S +K++V A
Sbjct:  158 SAFAAGKGNALVLDVGSEVASVTPVIDGLVLYKPARRSQYAGDYLDRQIKKVLVSRGIDLTPRFEIKNKKAVEMGEPPVFTKRELPNVTHSFTDLQVSRILSEFKDSMCQVN---DVPLTPEISGEAADRVFEFPTGYSTTFGADRLSTSESLFKPSEYPFDGETVPDTARGLSEMVVDTINASNVDVRAHLANNIVITGGGSLVQGLSDRVSKDV-TQALSGLKVRVAA 383          

HSP 2 Score: 29.6462 bits (65), Expect = 3.343e-14
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:  657 SSREE--YWAWIGGSILASLSTFQQ 725
            S++EE  + AWIGGS+L SL +F Q
Sbjct:  385 SNQEERRHGAWIGGSVLGSLGSFHQ 409          
BLAST of EY755895 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 62/218 (28.44%), Postives = 96/218 (44.04%), Query Frame = 1
Query:  136 GVSHTV--PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA------------KTISAVEKSYELPDGQ---------------------------VITIGAERFRCP*VLFQPSMIGMESAGIHETTYNSLMKCDVDIMKDLDGIIVLTGGSALFPGIADRMSK*IPALAPSSMKIKVVAPPE 666
            G SHT   PI +G  L  AI RLD+ G+ +T+ L ++L+ R +      E  IV +MKE + Y +LD++ +LE               + + + K Y LPD                             V+T+  ERF  P +LF PS IG+   GI +    SL+   + +   L   IV+ GG++L  G   R+   I    P   +++V  P +
Sbjct:  183 GYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVRHFDMRN--EPYIVNEMKEAVCYTSLDFKGDLEKTWKGTRGEKREDYLSGAGIAKDYVLPDSHTRFHGVVRDYEPGVSARARKGIVSTEDVLTLRNERFVVPELLFNPSDIGIRQPGIADLVKQSLLAVPIGLWPGLLANIVVVGGNSLSEGFCQRLQTEILKRFPDECRVRVARPED 398          
BLAST of EY755895 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 1
Query:  115 IVPDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTI---SAVEKSYELPD------GQV-------------ITIGAERFRCP*VLFQPSMIGMESAGIHETTYNSLMKCDVDIMKDLDGIIVLTGGSALFPGIADRMSK*IPALAPSSMKIKV 651
            +V DSG   +       G  +  +++R+D+ G+ LT+ L   ++ R      + E  ++ + KE L +++ ++++ ++ A+     +   K Y +PD      G V             I +G ERF  P +LF PS I ++  G+ E    S+ +C   +   L   I++ GGS+ FPG  +R+ + + ++ P+   + V
Sbjct:  146 VVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYR--QLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPDFHSTFRGVVKDVKEPHDPQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNV 344          
BLAST of EY755895 vs. ExPASy Swiss-Prot
Match: ACT_SPOLI (Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 1
Query:   52 PNTVVNIQAGLSLYASGRTTGIVPDSGDGVSHTVPIYEGYALPH 183
            P   V IQA LSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:  121 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 164          
The following BLAST results are available for this feature:
BLAST of EY755895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
ARP4_YARLI3.343e-1424.78Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
ARP6_NEUCR3.344e-1428.44Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP6_CAEEL1.271e-1324.38Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]
ACT_SPOLI2.831e-1386.36Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-B05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755895 ID=EY755895; Name=EY755895; organism=Citrus sinensis; type=EST; length=922bp
ACTGGACGCCTGAGGTACCAGTACGGAATCCTCAATAGAGCGACGCGTCC
GCCAAATACTGTCGTTAACATCCAGGCTGGTCTTTCACTCTATGCCAGTG
GTCGTACTACTGGTATTGTGCCTGACTCTGGAGATGGTGTCAGCCACACA
GTCCCAATCTATGAGGGGTATGCTCTTCCACATGCAATCTTGCGTCTTGA
CCTTGCCGGTCGTGATCTCACTGATGCCTTGATGAAAATCTTGACTGAGC
GTGGCTACTCATTTACCACCACAGCCGAACGTGAAATTGTGAGGGATATG
AAGGAGAAATTGGCATACATTGCCCTTGATTATGAACAAGAATTAGAAAC
CGCCAAGACCATCTCTGCTGTTGAAAAGAGCTATGAGTTACCAGATGGTC
AGGTGATCACCATTGGTGCTGAGCGTTTTAGATGCCCATAAGTCCTTTTC
CAACCATCAATGATCGGTATGGAGTCTGCTGGTATTCATGAAACAACTTA
CAACTCCTTAATGAAATGTGATGTTGATATTATGAAGGATCTGGATGGGA
TCATTGTACTTACTGGCGGTTCCGCCTTGTTCCCTGGGATTGCTGATAGA
ATGAGCAAATAAATCCCTGCATTAGCACCTAGCAGCATGAAGATAAAGGT
GGTTGCTCCTCCCGAGAGGAATATTGGGCCTGGATAGGCGGATCCATTTT
GGCATCCCTCAGCACTTTCCAGCAATGTGGATGGCCAATCTGATCATGAT
GACCTGGGCCTTCCCTAGTGCACCCGAAATGCTTCTGATCCGGAGCCAAT
ATGGACTGGGACCTGGTGCCTTTTATATACAAATGCTGCTGGCCTTTCCT
CTTTAATACCAAATGCTGGTTGCATTTCCTTCTTTCTTTGCCTTGGGGTC
CTTATTCAACGGGGGACAAAAC
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