GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYR_CANFA (Pyruvate kinase isozyme R (Fragment) OS=Canis familiaris GN=PKLR PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP +S +D  D+ FG+   VD +  SFV+ A  +  +++ +    R   I +I+KIE+ + +K  +EI+  SDG MVARGDLG +IP E+V  AQ+ ++  C    KPV+ A+Q+LESMI
Sbjct:  206 LPGLSEQDAQDLRFGVEHNVDIVFASFVRKASDVAAIRAALGPEGRT--IKIISKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMI 323          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_CLOAB (Pyruvate kinase OS=Clostridium acetobutylicum GN=pyk PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 45/120 (37.50%), Postives = 79/120 (65.83%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP ++ KD  D+ FG  E +D ++ SF++  E +  ++  +     ++ I + +KIE+ + + N++ II  SDG MVARGD+G +IP+++VP  Q+ I++ C  + KPVI A+Q+L+SM+
Sbjct:  166 LPAMTEKDKSDLIFGCKEEIDMVSASFIRKPEDVLAIRKVLNENGGEN-IQIFSKIENQEGVDNIDAIIEVSDGIMVARGDMGVEIPIQRVPLIQKMIIKKCNAVGKPVITATQMLDSMM 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYR_MOUSE (Pyruvate kinase isozymes R/L OS=Mus musculus GN=Pklr PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP +S +D LD+ FG+   VD I  SFV+ A  +  ++  +    R   I +I+KIE+ + +K  +EI+  SDG M+ARGDLG +IP E+V  AQ+ ++  C    KPV+ A+Q+LESMI
Sbjct:  261 LPGLSEQDLLDLRFGVEHYVDIIFASFVRKASDVVAVRDALGPEGRG--IKIISKIENHEGVKKFDEILEVSDGIMMARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMI 378          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_YEAST (Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=PYK2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/119 (39.50%), Postives = 75/119 (63.03%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  G+  +  SF++++E +  ++   A  S   DI +I+KIE+   L N +EI+  +DG M+ARGDLG +I   +V + Q+K++  C    KPVI A+Q+L+SM
Sbjct:  190 LPPLSAKDMKDLQFGVRNGIHIVFASFIRTSEDVLSIRK--ALGSEGQDIKIISKIENQQGLDNFDEILEVTDGVMIARGDLGIEILAPEVLAIQKKLIAKCNLAGKPVICATQMLDSM 306          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_METJA (Pyruvate kinase OS=Methanocaldococcus jannaschii GN=MJ0108 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 49/120 (40.83%), Postives = 77/120 (64.17%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP I   D  +I F + +  ++IA+SFV++ E +  LK  I+    D +  VI+KIE+ + LKN++EI   SDG MVARGDLG ++P+E +P  Q+ I+++  +     I A+Q+L+SMI
Sbjct:  149 LPIIDETDLKNIKFAVEKDFEYIALSFVRNKEDVKELKDIISEYKGDCE--VISKIETKEGLKNIKEIARESDGVMVARGDLGVEVPIENIPIEQKNILRIANRYGILSITATQILDSMI 266          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_YEAST (Pyruvate kinase 1 OS=Saccharomyces cerevisiae GN=PYK1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.982e-19
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  +  SF+++A  +  ++  +  + +D  + +I KIE+   + N +EI+  +DG MVARGDLG +IP  +V + Q+K++       KPVI A+Q+LESM
Sbjct:  188 LPALSEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKD--VKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESM 304          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_LACLA (Pyruvate kinase OS=Lactococcus lactis subsp. lactis GN=pyk PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 47/120 (39.17%), Postives = 80/120 (66.67%), Query Frame = -3
Query:   33 PTISPKDWLDIDFGITE--GVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 386
            P ++ +D  DI FG+++  G++FIAISFV++A  +  ++  I   + +  + ++AKIE+   ++NL+EII A+DG M+ARGD+G ++P E VP  Q+ I+    +  K V+ A+ +LESM
Sbjct:  196 PALAERDDADIRFGLSQPGGINFIAISFVRTANDVKEVRR-ICEETGNPHVQLLAKIENQQGIENLDEIIEAADGIMIARGDMGIEVPFEMVPVYQKLIISKVNKAGKIVVTATNMLESM 314          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_CANGA (Pyruvate kinase 1 OS=Candida glabrata GN=PYK1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.741e-18
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  I  SF+++A+ +  ++  +    +D  I ++ KIE+   + N +EI+  +D  MVARGDLG +IP  +V + Q+K++       KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKADLRFGVENGVHMIFASFIRTAQDVLTIREVLGEDGKD--IKIVVKIENQQGVNNFDEILKVTDAVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_SACCA (Pyruvate kinase OS=Saccharomyces castellii GN=PYK1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  +  SF+++A+ +  ++  +    +D  I ++ KIE+   + N +EI+  +D  MVARGDLG +IP  +V + Q+K++       KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKADLRFGVKNGVHMVFASFIRTAQDVLTIREVLGEDGKD--IKIVVKIENQQGVNNFDEILKVTDAVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYC_ARATH (Probable pyruvate kinase, cytosolic isozyme OS=Arabidopsis thaliana GN=At4g26390 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 44/122 (36.07%), Postives = 82/122 (67.21%), Query Frame = -3
Query:   27 LPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LPT++ KD  DI ++G+   +D IA+SFV+    +  ++  +   ++   I +++K+E+ + + N ++I++ SD  M+ARGDLG +IP+E++  AQ+ ++  C  + KPV+ A+Q+LESMI+
Sbjct:  174 LPTLTEKDKQDILEWGVPNQIDMIALSFVRKGSDLVQVRKLLGKHAKT--ILLMSKVENQEGVANFDDILINSDAFMIARGDLGMEIPIEKIFLAQKVMIYKCNFMGKPVVTATQMLESMIK 293          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYR_CANFA1.205e-1941.67Pyruvate kinase isozyme R (Fragment) OS=Canis fami... [more]
KPYK_CLOAB1.205e-1937.50Pyruvate kinase OS=Clostridium acetobutylicum GN=p... [more]
KPYR_MOUSE1.574e-1942.50Pyruvate kinase isozymes R/L OS=Mus musculus GN=Pk... [more]
KPYK2_YEAST1.574e-1939.50Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=P... [more]
KPYK_METJA2.685e-1940.83Pyruvate kinase OS=Methanocaldococcus jannaschii G... [more]
KPYK1_YEAST5.982e-1938.66Pyruvate kinase 1 OS=Saccharomyces cerevisiae GN=P... [more]
KPYK_LACLA7.813e-1939.17Pyruvate kinase OS=Lactococcus lactis subsp. lacti... [more]
KPYK1_CANGA1.741e-1838.66Pyruvate kinase 1 OS=Candida glabrata GN=PYK1 PE=3... [more]
KPYK_SACCA2.273e-1837.82Pyruvate kinase OS=Saccharomyces castellii GN=PYK1... [more]
KPYC_ARATH2.273e-1836.07Probable pyruvate kinase, cytosolic isozyme OS=Ara... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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