EY729059

Overview
NameEY729059
Unique NameEY729059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOAB (3-isopropylmalate dehydratase large subunit OS=Clostridium acetobutylicum GN=leuC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 48/150 (32.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  352 VKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +K  MT+T+KI A  +    +  G  +  N+D+++ +DV  P +   FK   G N KV+D++K+ I+PDH+    D ++  +  ++R F   + I+ +++I ++G          + H  + +KG   PG+V++G DSHTCT GA G F+
Sbjct:    1 MKKPMTMTQKILANHAGLDYVEAGQLITANLDLVLGNDVTTPVAVKAFKT-MGTN-KVFDKKKVAIVPDHFTPNKDIKSAEHCKMIRQFAKSKEIENYFEIGEMG----------IEHALIPEKGLAVPGDVIIGADSHTCTYGALGVFS 138          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_UNCTG (3-isopropylmalate dehydratase large subunit OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=leuC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENA--KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+TEKI A    K  + PG+ +   +DI +++DV  P    +  KEF +    KV+D+ KI ++ DH+    D  +  +V  +R+F  E  IK++Y+  ++G          V H  L +KG   PG+V++G DSHTCT GA G F+
Sbjct:    4 TITEKILASHCGKKVVEPGEFIEPKIDIALSNDVTAP----LAVKEFRKTGIKKVFDKNKIALVMDHFTPNKDILSAEHVKFVREFAKEHKIKHYYEGGNVG----------VEHALLPEKGIVVPGDVIIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+TEKI A  + K ++ PG+ V   +D+ M +DV  P S    +K   E  KV+D++KI ++  H++   D ++     I+RDF  + NIK+F+            + +G+ H  L + G   PG++++G DSHTCT G  G F+
Sbjct:    4 TITEKIIADHAGKKEVFPGELVTAKIDLAMANDVTAPLSIKTLEKYGIE--KVFDKDKIALVLSHFVPAKDIKSAEQAKIVRDFAKKHNIKWFFG-----------EGEGIEHTLLPENGIVVPGDLVVGADSHTCTYGGIGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBB (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=leuC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 49/146 (33.56%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++G          + H  L +KG    G+V++G DSHTCT GA G F+
Sbjct:    3 MTMTQKILAAHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBA (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=leuC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 49/146 (33.56%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+T+KI A  +    +  G  + VN+D+++ +D+  P +   FKK FG + KV+++ +I I+PDH+    D +A   V  +R+F  +  I+ F+++ ++G          + H  L +KG    G+V++G DSHTCT GA G F+
Sbjct:    3 MTMTQKILASHAGLESVKAGQLIEVNLDLVLGNDITTPVAINEFKK-FGVD-KVFNKSQIAIVPDHFTPNKDIKAAEQVKYVREFSNKMGIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 48/146 (32.88%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MTL EKI ++ + + ++ PG+ + +  DI + +D+  P +   FK+  G+  K  DR  +V++PDH+    D ++   V ++R+F  EQ I+ F++I  +G          + H+ L ++G  + G++++G DSHTCT GA G FA
Sbjct:    1 MTLAEKILSQKAGR-KVEPGEFLLLEPDIALANDITAPLAIKKFKEYGGKKVKYPDR--VVLVPDHFTPNKDIKSAMQVKMMREFAREQGIEKFFEIGRMG----------IEHVLLPEEGIVKSGDLVVGADSHTCTYGALGAFA 133          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+TEKI A  + +  + PG+ V V VD+ + +D+  P +    +K +G + KV D  KI ++ DH+    D  + + + I RDF  +  IK +++ +D           GV H  L +KG   PG++++G DSHTCT G  G F+
Sbjct:    3 MTITEKIIAAHAGRDYVEPGELVTVKVDLAIANDITAPLAIKQLEK-YGID-KVHDPNKIALVMDHFFPPKDIMSAQQIKISRDFAKKMGIKNYFEGQD----------SGVMHTLLPEKGFVVPGDLVIGADSHTCTYGGIGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+TEKIF+  + K ++  G+ V V++D+++ +D+  P S   F++   E  K+   +   I+ DHYI   D  +     I R+F  + ++KYF+D KD+G          + H  L +KG   PG+V++G DSHTCT GA G F+
Sbjct:    4 TITEKIFSEHAGK-KVHAGEIVRVDIDMIIGNDITTPISIRAFEESGAE--KLARPDNFSIVMDHYIPAKDIASANQAKISREFAYKHDLKYFFDEKDMG----------IEHALLPEKGLVIPGDVIIGADSHTCTHGALGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOPH (3-isopropylmalate dehydratase large subunit OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=leuC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 45/146 (30.82%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+T+KI A  +  P++  G  +  N+D+++ +D+ GP    I + +  +   V+D++KI ++PDH+    D ++  +   +R+F  E +I  +++I ++G          + H  L +KG    GE  +G DSHTCT GA G F+
Sbjct:    3 MTMTQKILAAHANLPEVKAGQLIEANLDLVLANDITGP--VAIHEIQRLKKKTVFDKDKIALVPDHFTPNKDIKSAEHCKCVREFAKEHDITNYFEIGEMG----------IEHALLPEKGLIVAGETCIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOK5 (3-isopropylmalate dehydratase large subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 47/147 (31.97%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            AMT+T+KI A  +    +  G+ + V +D+++ +D+  P +   F K  G N KV+ +EK+ I+PDH+    D ++      +R+F  +++IK +++I  +          G+ H  + +KG    G+V++G DSHTCT GA G F+
Sbjct:    2 AMTMTQKILASHAGLDSVKSGELIKVKLDLVLGNDITTPVAINEFNK-IGSN-KVFHKEKVAIVPDHFTPNKDIKSAEQCKCVREFAKDKDIKNYFEIGQM----------GIEHALIPEKGLAVCGDVIIGADSHTCTYGALGAFS 136          
The following BLAST results are available for this feature:
BLAST of EY729059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LEUC_CLOAB5.668e-1832.003-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_UNCTG1.263e-1735.373-isopropylmalate dehydratase large subunit OS=Unc... [more]
LEUC_HYDS01.263e-1733.793-isopropylmalate dehydratase large subunit OS=Hyd... [more]
LEUC_CLOBB2.813e-1733.563-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOBA2.813e-1733.563-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC2_THEMA3.674e-1732.883-isopropylmalate dehydratase large subunit 2 OS=T... [more]
LEUC_SULSY4.798e-1734.253-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_SULNB4.798e-1735.173-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_CLOPH4.798e-1730.823-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOK56.267e-1731.973-isopropylmalate dehydratase large subunit OS=Clo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729059 ID=EY729059; Name=EY729059; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGC
CGCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAAT
CTTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAG
CAAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTT
CATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCAC
AATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTG
TCGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTC
GGTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAG
AGAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATC
TTGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAA
AGAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTA
TACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTG
GATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGA
TATTAAAGATCTTGGGTACTTTAAGGCTAACCCGGATTATAAAGGCGTAT
GTCATATTGCACTTGCCCAAAAAGGCCATTGCAGGCCTGGAGAGGTCTTG
CTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCCATTTGC
ACTGGCATGGGCACACTGATGCAGGTTTATATTGGGCA
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