EY729059

Overview
NameEY729059
Unique NameEY729059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC2_RUBXD (3-isopropylmalate dehydratase large subunit 2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=leuC2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPF 798
            TL EK+    SE    SPGD + V  D++M +DV GP +F   ++   +  +V+D  K+V++ DH++   D R+           +++ +K + D++ + Y+       G+ H  L + G   PG V+ G DSHTCT GA G F
Sbjct:    4 TLAEKLLISHSEVDDASPGDIIMVRCDLVMANDVSGPVAFRQMERMGVQ--RVFDPSKVVMVSDHFMPAKDARSA---------ALQKRLKSWSDLQGVYYYGQGRG--GIEHTVLVEDGWIVPGMVIAGGDSHTCTYGALGAF 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_HELHP (3-isopropylmalate dehydratase large subunit OS=Helicobacter hepaticus GN=leuC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 43/146 (29.45%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+++KI A  +    + P D +   +D+++ +D+  P +   FK+   +  KV+D++KI ++ DH+    D +A       R F  + +I ++YD+ ++G          V H  L ++G    G++++G DSHTCT GA G F+
Sbjct:    3 MTMSQKILADRAGLESVRPNDLIMAKLDMVLGNDITTPVAINAFKE--AKFQKVFDKDKISLVMDHFAPNKDIKAATQSAQCRCFAKDFDISHYYDVGNMG----------VEHALLPEQGIVTIGDLIIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CALMQ (3-isopropylmalate dehydratase large subunit OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=leuC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +TLTEKI ++A+ + Q+SPGD   + VD+   HD+ G     + +       KVWD ++ VI  DH     ++RA      LR F    N++ F+D+ D           G+ H  L +K +  PG+V++  DSHT T GA G FA
Sbjct:    3 LTLTEKILSKAAGR-QVSPGDVTEITVDLAAFHDLTGHHVVEVMENIGA--VKVWDLDRFVIAFDHLAPPPNDRAAEIQVKLRKFAKSINVRNFHDVGD-----------GILHQLLLEK-YALPGQVVMAADSHTTTVGAVGAFA 133          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CAMHC (3-isopropylmalate dehydratase large subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=leuC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.965e-14
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+TEKIF+      Q+  G+ V   +D+++ +D+  P S   F+K     A + + +   I+ DHYI T D  +     I R+F  + N+K F+D KD+G          + H  + +KG    G+V++G DSHTCT GA G F+
Sbjct:    4 TITEKIFSD-HVGAQVYAGEIVESKIDMVIGNDITTPISIRQFEKSGA--AHLANPDGFAIVMDHYIPTKDIASANQAKISREFAYKHNLKNFFDEKDIG----------IEHALIPEKGLVVSGDVIIGADSHTCTHGALGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_HERA2 (3-isopropylmalate dehydratase large subunit OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=leuC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 43/144 (29.86%), Postives = 70/144 (48.61%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPF 798
            T  E+I   AS +  +  GD V VNVD++M HD   P        E G   +VWDR+K+ ++ DH    +  R       +R +  +Q I + +D+            +G+ H  L ++G  +PG +++G+DSH+   GA   F
Sbjct:    4 TFAEQILGHASGRSDVQAGDMVVVNVDLVMMHDSLSPSIIETLHNELGAE-RVWDRDKVAVVIDHVAPAATVRQAEQQQQVRRWVAQQGISHLFDVG-----------RGISHPVLIEEGLVQPGMLVVGSDSHSTGYGAAAAF 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_DESDA (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAK-VWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            A TL +KI    ++      G  V   V +++ +D+ GP +   F   +G  AK V+DR KI ++ DH+    D  +   V I R F  EQ+I ++Y+  D G          V H  L ++G   PG++++G DSHTCT G  G FA
Sbjct:    2 AQTLAQKILQAHTDDAVEQDGQIVQCRVSMVLANDITGPLAIKSF---YGMGAKKVFDRTKIALVMDHFTPQKDIDSANQVLISRRFAEEQDIVHYYEGGDCG----------VEHTLLPEQGLVGPGDLVIGADSHTCTYGGIGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+ EKIFA A    +   G  V + +D++M H++  P    I         +V+D  +I  + DH   + D +      +LRD+    NIK F+DI       AN    GVCH    +KG  RPG  ++  DSHTCT GAFG FA
Sbjct:    3 MTIAEKIFA-AHLVDEPFHGTRV-LKLDVVMCHEITTP--IAIADLIARGKDRVFDTSRIKAVIDHVTPSKDSKTATQAKMLRDWARRHNIKDFFDIG------AN----GVCHALFPEKGFIRPGYTVIMGDSHTCTHGAFGAFA 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_DESVV (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            A TL +KI  R +++     G  V   V +++ +D+  P +   F+    +  +V+D++++ ++ DH+    D  A + V + R+F  E  + ++Y+  D G          V H  L + G   PG+V++G DSHTCT G  G FA
Sbjct:    2 AHTLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAK--RVFDKDRVALVMDHFTPQKDIEAAQQVKLTREFAREMGVTHYYEGGDCG----------VEHALLPELGLVGPGDVVVGADSHTCTYGGLGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_DESVH (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            A TL +KI  R +++     G  V   V +++ +D+  P +   F+    +  +V+D++++ ++ DH+    D  A + V + R+F  E  + ++Y+  D G          V H  L + G   PG+V++G DSHTCT G  G FA
Sbjct:    2 AHTLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAK--RVFDKDRVALVMDHFTPQKDIEAAQQVKLTREFAREMGVTHYYEGGDCG----------VEHALLPELGLVGPGDVVVGADSHTCTYGGLGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_DESVM (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=leuC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            A TL +KI    +++   + G  V   V + + +D+  P +   F+    +  KV+DR+K+ ++ DH+    D  + + V + R+F  E  + ++Y+  D G          V H  L + G   PG+V++G DSHTCT G  G FA
Sbjct:    2 AHTLAQKILQAHTDEAITAAGQIVRCRVSLALANDITAPLAIKSFRAMGAK--KVFDRDKVALVMDHFTPQKDIASAQQVKLTREFAREMGVTHYYEGGDCG----------VEHALLPELGLVGPGDVVVGADSHTCTYGGLGAFA 136          
The following BLAST results are available for this feature:
BLAST of EY729059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LEUC2_RUBXD2.229e-1432.643-isopropylmalate dehydratase large subunit 2 OS=R... [more]
LEUC_HELHP3.802e-1429.453-isopropylmalate dehydratase large subunit OS=Hel... [more]
LEUC_CALMQ3.802e-1434.933-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC_CAMHC4.965e-1433.793-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_HERA28.469e-1429.863-isopropylmalate dehydratase large subunit OS=Her... [more]
LEUC_DESDA1.106e-1333.783-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_GEOUR1.887e-1336.303-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_DESVV1.887e-1329.253-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_DESVH1.887e-1329.253-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_DESVM2.464e-1329.933-isopropylmalate dehydratase large subunit OS=Des... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729059 ID=EY729059; Name=EY729059; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGC
CGCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAAT
CTTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAG
CAAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTT
CATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCAC
AATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTG
TCGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTC
GGTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAG
AGAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATC
TTGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAA
AGAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTA
TACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTG
GATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGA
TATTAAAGATCTTGGGTACTTTAAGGCTAACCCGGATTATAAAGGCGTAT
GTCATATTGCACTTGCCCAAAAAGGCCATTGCAGGCCTGGAGAGGTCTTG
CTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCCATTTGC
ACTGGCATGGGCACACTGATGCAGGTTTATATTGGGCA
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