EY729059

Overview
NameEY729059
Unique NameEY729059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_METS5 (3-isopropylmalate dehydratase large subunit OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=leuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            TLTEKI +RAS K  +SPGD +    DI+  HD+ G     + +K      K++D+ KIV+  DH     D R+      +R F  E  +  F+DI             G+ H  L ++ +  PG+V++  DSHT T+GA G FA
Sbjct:    4 TLTEKILSRASGKT-VSPGDVIEAKTDIVAFHDLTGYHVIEVMEK--ANMMKIFDKTKIVVAFDHLAPPPDVRSAEIQGNIRKFVKEMRLPNFHDIN-----------VGILHELLIEQ-YALPGQVIVAADSHTTTSGAVGAFA 133          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_GEOBB (3-isopropylmalate dehydratase large subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  364 MTLTEKIF-ARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT  +KIF A   ++P    G  V +++D++M H++  P +         +  +V+D  KI  + DH   + D +      +LRD+    +IK F+DI       AN    GVCH    +KG  RPG  ++  DSHTCT GAFG FA
Sbjct:    3 MTTAQKIFSAHLVDEP--FAGTKV-LSIDVVMCHEITTPIAIADLMARGKD--RVFDPTKIKAVIDHVTPSKDSKTATQAKMLRDWARRHDIKDFFDIG------AN----GVCHALFPEKGFIRPGNTVIMGDSHTCTHGAFGAFA 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T  EKIFA        S G  V + +D++M H++  P +         +  +V+D  KI  + DH   + D +      +LRD+     IK F+D+           + GVCH    +KG+ RPG  ++  DSHTCT GAFG FA
Sbjct:    4 TTAEKIFASHLVDEPFS-GTKV-LRLDVVMCHEITTPIAIADLMARGKD--RVFDPTKIKAVIDHVTPSKDSKTATQAKMLRDWARRHAIKDFFDV----------GHNGVCHALFPEKGYIRPGYTVIMGDSHTCTHGAFGAFA 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_METMA (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina mazei GN=leuC1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  439 NVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +VD  M HD     +   FK+   E  +VWD  +IVI  DH    + E +      +R++  EQ+I  FY+I +           G+CH  L + G   PG++L+G DSH+CT GAFG FA
Sbjct:    4 DVDYAMAHDGTSILAVNAFKEM--EMERVWDPSRIVIPFDHIAPANTETSATLQKEIREWVREQSIPNFYEIGE-----------GICHQVLPENGFALPGKLLVGADSHSCTYGAFGAFA 111          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_PICTO (3-isopropylmalate dehydratase large subunit OS=Picrophilus torridus GN=leuC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGA 786
            T  EKIF+  S     + GD V  N+D +M +D+ GP +   F  E G        ++IV+IPDH++   D  +      ++DF ++ N  +FYD+             GVCH  + +KG   PG ++ G DSHT T GA
Sbjct:    3 TAVEKIFSDKSGNDARA-GDYVIANLDYVMVNDITGPIAIDAFN-ELGYKPL---SDRIVVIPDHFVPPKDINSAIQYKKVKDFALKHNT-HFYDL----------GRGGVCHQVMMEKGFAAPGRLIAGADSHTNTYGA 126          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MTL EKI ++     ++  GD++ V VD+ MTHD   P ++   K+    +  VW+ +KIV+  DH +  +  +A     +  +F     IK F+              +G+CH  LA+  +  P   + G DSHTCT GAFG FA
Sbjct:    1 MTLVEKILSKKVGY-EVCAGDSIEVEVDLAMTHDGTTPLAYKALKEM---SDSVWNPDKIVVAFDHNVPPNTVKAAEMQKLALEFVKRFGIKNFHK-----------GGEGICHQILAEN-YVLPNMFVAGGDSHTCTHGAFGAFA 130          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_GEOSL (3-isopropylmalate dehydratase large subunit OS=Geobacter sulfurreducens GN=leuC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+ EKIFA        + G  V + +D++M H++  P +         +  +V+D  KI  + DH   + D +      +LRD+     I  F+D+       AN    GVCH    +KG  RPG  ++  DSHTCT GAFG FA
Sbjct:    4 TIAEKIFASHLVDEPFA-GTKV-LRLDVVMCHEITTPIAIADLMARGKD--RVFDPTKIKAVIDHVTPSKDSKTATQAKMLRDWARRHGIVDFFDVG------AN----GVCHALFPEKGFIRPGYTVIMGDSHTCTHGAFGAFA 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_MYCS2 (3-isopropylmalate dehydratase large subunit OS=Mycobacterium smegmatis GN=leuC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 45/146 (30.82%), Postives = 67/146 (45.89%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+ EKI AR +   ++  G+ V V VD+ +  D+        F   + +   + D  K+ I+ DH +     +        R F  +  I+ FYD+             G+CH  +A+ G  RPGE+L  TDSHTC  GAF   A
Sbjct:    3 MTIIEKILARKAGVAEVHAGEIVTVEVDMTVLIDLQ-------FATMWMQPLMINDASKVAIVMDHAVPAPTIKDAAGGPNARKFANDYGIERFYDV----------GRHGICHQVIAENGLARPGEILACTDSHTCAGGAFNTAA 131          
The following BLAST results are available for this feature:
BLAST of EY729059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LEUC_METS53.218e-1335.173-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_GEOBB7.170e-1334.693-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_GEOMG9.364e-1333.103-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC1_METMA1.223e-1236.363-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_PICTO7.927e-1233.573-isopropylmalate dehydratase large subunit OS=Pic... [more]
HACA_METJA1.766e-1132.88Homoaconitase large subunit OS=Methanocaldococcus ... [more]
LEUC_GEOSL2.306e-1133.103-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_MYCS23.934e-1130.823-isopropylmalate dehydratase large subunit OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729059 ID=EY729059; Name=EY729059; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGC
CGCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAAT
CTTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAG
CAAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTT
CATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCAC
AATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTG
TCGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTC
GGTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAG
AGAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATC
TTGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAA
AGAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTA
TACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTG
GATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGA
TATTAAAGATCTTGGGTACTTTAAGGCTAACCCGGATTATAAAGGCGTAT
GTCATATTGCACTTGCCCAAAAAGGCCATTGCAGGCCTGGAGAGGTCTTG
CTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCCATTTGC
ACTGGCATGGGCACACTGATGCAGGTTTATATTGGGCA
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