EY729000

Overview
NameEY729000
Unique NameEY729000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729000 vs. ExPASy Swiss-Prot
Match: Y882_KINRD (UPF0678 fatty acid-binding protein-like protein Krad_0882 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=Krad_0882 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 PRVRAPISYLLGTWRGQGSGGYPTINAFD--YGEELNFTHSGGKPVIAYTQKTWKL----GSGEPMHAESGYWRPNP---------DG----SIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREV---SRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 456
            P    P+S+LLG W G G  G+P     D  +G+ + F H  G+  + YT  TW L     + EP+  E+GYWRP P         +G     +EV++A  TG+VEV  GT  A    I L S++V   +   E    +R++ +V G+L + + +A      LR +  A L+++
Sbjct:   10 PLTLVPLSWLLGRWEGAGVLGHPARGDSDTRFGQVVEFGHD-GRDFLTYTSTTWALDEDGSTTEPLDVETGYWRPQPVDLDTPAPAEGPRPVELEVLLAHPTGVVEVLVGT--ARGPRIDLSSDVVARTATAHEYTAGNRMYGMVEGDLLWALDVALEG-HPLRSYASARLKRV 179          
BLAST of EY729000 vs. ExPASy Swiss-Prot
Match: Y4179_STRCO (UPF0678 fatty acid-binding protein-like protein SCO4179 OS=Streptomyces coelicolor GN=SCO4179 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 42/154 (27.27%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   16 PISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 456
            P+ +LLG W G G   +P     ++G+E++FTH  G+  + Y   TW L +      P+ +E G+WR + +  +EV + +  G++E+  G    ++  I L ++ V   +  +  +   R++  V  +L +V +  T  +  LRP++ A L+K+
Sbjct:   14 PLVFLLGDWAGAGVHDFPGAEKCNFGQEVSFTHD-GRDFLEYQSHTWVLDNDGNKVRPLESEHGFWRIDANRKVEVTMTRDDGVIEIWYGELADQKPQIDLVTDAVARTAASQPYTGGKRLYGYVKSDLMWVGEKQTPEV-ELRPYMSAHLKKV 165          
BLAST of EY729000 vs. ExPASy Swiss-Prot
Match: Y2872_THEFY (UPF0678 fatty acid-binding protein-like protein Tfu_2872 OS=Thermobifida fusca (strain YX) GN=Tfu_2872 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   13 APISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGS----GEPMHAESGYWR------------PNPDGSIEVVIAQSTGLVEVQKGTYNAE------EKVIKLQSELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 456
            A +S+LLG W G G  GYP    F + + + FTH  G P + Y  + W++      GEP+ +ESGYWR              P   +EV+I+   G  EV  GT  A       + V++ ++ L   AS    +  +F      L Y   +A N    L+P++ A L+++
Sbjct:   10 AKLSFLLGRWEGLGVAGYPDTEEFQFTQVIEFTHD-GHPHLNYRSQVWRVNEDGSRGEPVTSESGYWRVRTGKAAQQEDPDQPPIHVEVLISHPEGYSEVYLGTVFAHRVELHTDVVVRTETGLPAAAS--HRLYGLFGDNRETLGYAWDLAANS-KELQPYMSAQLQRV 175          
The following BLAST results are available for this feature:
BLAST of EY729000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
Y882_KINRD4.621e-1432.18UPF0678 fatty acid-binding protein-like protein Kr... [more]
Y4179_STRCO2.995e-1327.27UPF0678 fatty acid-binding protein-like protein SC... [more]
Y2872_THEFY9.636e-1230.00UPF0678 fatty acid-binding protein-like protein Tf... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729000 ID=EY729000; Name=EY729000; organism=Citrus sinensis; type=EST; length=599bp
CCACGCGTCCGAGCACCAATATCCTACTTGCTGGGAACATGGAGAGGCCA
AGGCTCGGGTGGGTACCCTACCATCAATGCCTTCGATTATGGAGAAGAGC
TCAATTTCACACATTCTGGTGGCAAGCCAGTGATAGCATATACCCAGAAG
ACTTGGAAACTGGGTTCAGGAGAGCCTATGCATGCTGAGAGTGGCTACTG
GAGGCCCAACCCTGATGGTTCCATTGAAGTTGTCATTGCTCAAAGCACTG
GCCTTGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTAATC
AAGCTTCAGAGTGAACTTGTGGGAAATGCTTCCAAGGTGCGAGAGGTAAG
CAGAGTTTTTGAGCTGGTTAATGGTGAACTGCGTTATGTGGTTCAAATGG
CTACCAACCACCTGACTAGTCTTCGTCCACATCTGAAAGCCGTGCTCAGG
AAACTATGATTGTACAATCACTATGTTATTTCTCTTGATATACTGGCAAA
GCGCTCTATGAATGAGCATCTGTTGTAGTGGTACTGACTTGTTGGGGAAG
GTTTTGGTTTCATAATAATAAAAAACTGCTCTCAAAAAAAAAAAAAAAA
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