EY728942

Overview
NameEY728942
Unique NameEY728942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 64/143 (44.76%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  209 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDIL ++WSPAL I  VLLSI +LL+ PNPDDPL  ++A   ++++A+   TAR+WT+ Y+
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 64/143 (44.76%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  209 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDIL ++WSPAL I  VLLSI +LL+ PNPDDPL  ++A   ++++A+   TAR+WT+ Y+
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 64/143 (44.76%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  209 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDIL ++WSPAL I  VLLSI +LL+ PNPDDPL  ++A   ++++A+   TAR+WT+ Y+
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.785e-31
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  209 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+L   WSPAL I  VLLSI +LL  PNP+DPL  ++A     ++   ++ AR WT+ Y+
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.785e-31
Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  209 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  L + WSPAL I  VLLSI +L+  PNPDDPL  ++A + + ++ +  + AR WT+KY+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.203e-31
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYSW 640
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL  +WSP   +S +L SI SLL +PNP+ P   + A + Q +K +YE    +  ++ SW
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ-SW 149          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.203e-31
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYSW 640
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL  +WSP   +S +L SI SLL +PNP+ P   + A + Q +K +YE    +  ++ SW
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ-SW 149          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.203e-31
Identity = 62/145 (42.76%), Postives = 90/145 (62.07%), Query Frame = 2
Query:  206 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYS 637
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDIL +QWSP  T+   L+S+ SLL  P P +P   ++A +   +  ++  TAR WT  Y+
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.102e-31
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYSW 640
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL  +WSP   +S +L SI SLL +PNP+ P   + A + Q +K +YE    +  ++ SW
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ-SW 149          
BLAST of EY728942 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.102e-31
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMXQSDKAKYESTARSWTQKYSW 640
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL  +WSP   +S +L SI SLL +PNP+ P   + A + Q +K +YE    +  ++ SW
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ-SW 149          
The following BLAST results are available for this feature:
BLAST of EY728942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBE2N_MOUSE1.250e-3144.76Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.250e-3144.76Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.250e-3144.76Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC13_YEAST2.785e-3145.45Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO2.785e-3143.36Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2A_MOUSE6.203e-3142.47Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN6.203e-3142.47Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC1_SCHPO6.203e-3142.76Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2B_RAT8.102e-3141.78Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT8.102e-3141.78Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-F02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728942 ID=EY728942; Name=EY728942; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGATAGAGG
AGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTT
TCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCA
GGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCA
TGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCT
CCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCA
AGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTT
TAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTT
GCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCAT
CTGTCTTGATATCCTNTAAGAACAGTGGAGTCCAGCGCTTACCATTTCAA
AGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGAC
CCTCTTGTACCGGAGATTGCCCACATGTANCAGTCCGACAAGGCCAAATA
TGAATCCACGGCCAGGAGCTGGACACAGAAGTATTCATGGGGATGAAGGT
TGTTAGGATATTGCAGAAAAAGGGACACATTTATTGAAATATGTGGTGTG
TGTTGGCTATCTATTTTCTTTAACTTGCTTGGGGGAAGGGCAACTTTGGT
GTTTAAAATGGGTGTGGGGATTGCAGGGCCGGACGTTTTATGTTAATGTG
AATGTTGGTGTTTAAGCTCCTTGAAGGATGTAATTATGGCTTAGTACTGT
TAAAAAAAAAAAAAAGGGGCCGTC
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