EY728935

Overview
NameEY728935
Unique NameEY728935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: COPA3_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = -3
Query:  244 KARGWGTSLLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFA------ALGWITPIWAAIGMSLSSLTVVINALRL 717
            K  G  T LLSGD+   V   ALELGID      +P DKL  +++L  +G+ V+M+GDG+ND P L   D++V M   +D++  +AD V  +N + ++  A  L++ T + I ENL WA  YN + +P A      A   ++P  A + MSLSS++VV+N+ RL
Sbjct:  574 KNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEQGQIVMMVGDGLNDAPSLAMNDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLYKANIMLSPAIAGLAMSLSSVSVVLNSQRL 737          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.775e-24
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = -3
Query:  244 KARGWGTSLLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFA------ALGWITPIWAAIGMSLSSLTVVINALRL 717
            K  G  T LLSGD+   V   A ELGID      +P DKL  +++L  +G+ V+M+GDG+ND P L  +D++V M   +D++  +AD V  +N + ++  A  L++ T + I ENL WA  YN + +P A      A   ++P  A + MSLSS++VV+N+ RL
Sbjct:  574 KNLGINTFLLSGDNRENVQKCAFELGIDGYISNAKPQDKLNKIKELKEKGQIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLYKANLMLSPAIAGLAMSLSSVSVVLNSQRL 737          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: ATCS_SYNE7 (Cation-transporting ATPase pacS OS=Synechococcus elongatus (strain PCC 7942) GN=pacS PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.027e-24
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = -3
Query:  244 LLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAA------LGW-ITPIWAAIGMSLSSLTVVINALRL 693
            +L+GD+     ++A  +GI +    +RPD K   + QL   G+ V M+GDG+ND P L  AD+ +A+G+ TD+A  ++D  L+S  L  +V A  L+R T   I +NL +A +YN   +P AA      LGW ++P+ A   M+ SS++VV NALRL
Sbjct:  585 MLTGDNRRTADAIAQAVGITQVLAEVRPDQKAAQVAQLQSRGQVVAMVGDGINDAPALAQADVGIAIGTGTDVAIAASDITLISGDLQGIVTAIQLSRATMTNIRQNLFFAFIYNVAGIPIAAGILYPLLGWLLSPMLAGAAMAFSSVSVVTNALRL 741          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: COPA_STAES (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 57/153 (37.25%), Postives = 95/153 (62.09%), Query Frame = -3
Query:  235 LLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAALGWITPIWAAIGMSLSSLTVVINALRLTRM 693
            +L+GD++    ++A ++GI+     + P++K   +  L  +G++V M+GDG+ND P LV ADI +A+G+  ++A  +AD  +L   L  + +A   ++ T + I +NL WA  YN   +P AA G + P  A   M+LSS++VV+NALRL +M
Sbjct:  640 MLTGDNNRTAQTIAKQVGIEHVIAEVLPEEKAHQISLLQDKGKQVAMVGDGINDAPALVKADIGMAIGTGAEVAIEAADITILGGDLLLVPKAIKASKATIKNIRQNLFWAFGYNVAGIPIAACGLLAPWIAGAAMALSSVSVVMNALRLKKM 792          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: COPA_STAEQ (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 57/153 (37.25%), Postives = 95/153 (62.09%), Query Frame = -3
Query:  235 LLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAALGWITPIWAAIGMSLSSLTVVINALRLTRM 693
            +L+GD++    ++A ++GI+     + P++K   +  L  +G++V M+GDG+ND P LV ADI +A+G+  ++A  +AD  +L   L  + +A   ++ T + I +NL WA  YN   +P AA G + P  A   M+LSS++VV+NALRL +M
Sbjct:  640 MLTGDNNRTAQTIAKQVGIEHVIAEVLPEEKAHQISLLQDKGKQVAMVGDGINDAPALVKADIGMAIGTGAEVAIEAADITILGGDLLLVPKAIKASKATIKNIRQNLFWAFGYNVAGIPIAACGLLAPWIAGAAMALSSVSVVMNALRLKKM 792          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: ATCS_SYNY3 (Cation-transporting ATPase pacS OS=Synechocystis sp. (strain PCC 6803) GN=pacS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 63/178 (35.39%), Postives = 99/178 (55.62%), Query Frame = -3
Query:  238 RSDGPPWLPPCKARGWGTSLLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAA------LG-WITPIWAAIGMSLSSLTVVINALRLTR 750
            +   P  +   K  G    +L+GD+     ++A  +GI      +RP DK Q ++QL  +G  V M+GDG+ND P L  AD+ +A+G+ TD+A  ++D  L++  L  ++ A  L+R T   I +NL +A +YN + +P AA       G  + PI A   M+ SS++VV NALRL +
Sbjct:  565 KPSSPQVVQALKKLGLSVYMLTGDNQATAQAIADTVGIRHVLAQVRPGDKAQQVEQLQQKGNIVAMVGDGINDAPALAQADVGIAIGTGTDVAIAASDITLIAGDLQGILTAIKLSRATMGNIRQNLFFAFIYNVIGIPVAAGLFYPLFGLLLNPILAGAAMAFSSVSVVTNALRLKK 742          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: ATCU_RHILV (Copper-transporting P-type ATPase OS=Rhizobium leguminosarum bv. viciae GN=actP PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.563e-23
Identity = 66/157 (42.04%), Postives = 93/157 (59.24%), Query Frame = -3
Query:  244 LLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAA------LG-WITPIWAAIGMSLSSLTVVINALRL 693
            + +GD+     +VA  LGIDE    + P+ K  ++ +L  +G  + M GDGVND P L AAD+ +AMG+  D+A  SA   L+   L  +V+A  LA  T R I +NL +A  YN L +P AA      LG  ++P+ AA  MSLSS++V+ NALRL
Sbjct:  680 MATGDNERTARAVAKSLGIDEVRADVLPEGKKALIDELRSKGAIIAMAGDGVNDAPALAAADVGIAMGTGADVAMESAGITLVKGDLTGIVRARRLAEATMRNIRQNLGFAFGYNALGVPVAAGVLYPILGLLLSPMIAAAAMSLSSVSVISNALRL 836          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: ATP7B_MOUSE (Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 61/164 (37.20%), Postives = 103/164 (62.80%), Query Frame = -3
Query:  244 KARGWGTSLLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAA-----LGWITPIW-AAIGMSLSSLTVVINALRL 717
            K+ G   +L++GD+     ++A ++GI++    + P  K+  +Q+L  EG+KV M+GDGVND P L  AD+ +A+G+ TD+A  +AD VL+ N L  +V +  L++RT R I  NL+ A +YN + +P AA     +G +   W  +  M+ SS++VV+++L+L
Sbjct: 1207 KSMGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQL 1370          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: CTPC_MYCLE (Probable cation-transporting P-type ATPase C OS=Mycobacterium leprae GN=ctpC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = -3
Query:  238 QSRRWFLLGIPGTPXAWVVXENRWRSDGPPWLPPCKARGWGTS-LLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSA-TDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAALGWITPIWAAIGMSLSSLTVVINALRLTR 822
            Q+    L  + GT    +   +  R +    L   +A G     +L+GD   +  +VA ELGIDE    + P+DKL++++ L  EG  V M+GDGVND P L AADI +AMG A TD+A  +AD  L ++ L+ L+    L  R   VI EN   +   N   L   A G ++P+ AA+  + SS+ VV N+ RL R
Sbjct:  525 QTETPLLFAVDGTLVGLISLRDEVRPEAAEVLTKLRASGVRRIVMLTGDHPDIAKAVATELGIDEWRAEVMPEDKLKVVRDLQNEGYVVGMVGDGVNDAPALAAADIGIAMGLAGTDVAVETADVALANDDLNRLLDVRDLGGRAVEVIRENYGMSIAVNAAGLFIGAGGALSPVLAAVLHNASSVAVVANSSRLIR 721          
BLAST of EY728935 vs. ExPASy Swiss-Prot
Match: ATP7B_RAT (Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.077e-21
Identity = 59/163 (36.20%), Postives = 101/163 (61.96%), Query Frame = -3
Query:  244 KARGWGTSLLSGDSSPMVASVALELGIDEAHGGLRPDDKLQMLQQLHMEGRKVLMLGDGVNDVPVLVAADISVAMGSATDLAKTSADAVLLSNRLDALVQAFTLARRTRRVIIENLLWAGLYNGLMLPFAA-----LGWITPIWAAIGMSLSSLTVVINALRL 717
            K+ G   +L++GD+     ++A ++GI++    + P  K+  +Q+L  +G+KV M+GDGVND P L  AD+ +A+G+ TD+A  +AD VL+ N L  +V +  L++RT R I  NL+ A +YN + +P AA     +G +   W     + SS++VV+++L+L
Sbjct: 1198 KSMGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIDAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMPIGIVLQPWMG-SAAASSVSVVLSSLQL 1359          
The following BLAST results are available for this feature:
BLAST of EY728935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
COPA3_HELPY1.040e-2439.63Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA_HELPY1.775e-2439.02Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATCS_SYNE73.027e-2439.49Cation-transporting ATPase pacS OS=Synechococcus e... [more]
COPA_STAES1.962e-2337.25Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAEQ1.962e-2337.25Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
ATCS_SYNY31.962e-2335.39Cation-transporting ATPase pacS OS=Synechocystis s... [more]
ATCU_RHILV2.563e-2342.04Copper-transporting P-type ATPase OS=Rhizobium leg... [more]
ATP7B_MOUSE5.709e-2337.20Copper-transporting ATPase 2 OS=Mus musculus GN=At... [more]
CTPC_MYCLE3.700e-2237.06Probable cation-transporting P-type ATPase C OS=My... [more]
ATP7B_RAT1.077e-2136.20Copper-transporting ATPase 2 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728935 ID=EY728935; Name=EY728935; organism=Citrus sinensis; type=EST; length=827bp
GCGGCCAGGTGATTCGGGTCCTGGTCGTCGAACAGCACACTGTGGGCCGG
GCCATCGAGGTCGTCATACTGGCCGCTGTCCACCGCCCAGAAGAAGATGT
AAATGGCGATGGCCACAATCAACAGCGCCGCCGGGATCATCACGTAAAGA
GCTGGCATCTGCACTCCATGCCCGCGCGGCTCAAGCCGGCAGCGGACGGG
TTACGGGGGCGGCGCTCACGGCTGGCGTGCTCGGCATGCGAGTCAGGCGT
AAGGCGTTGATCACCACGGTCAACGAACTGAGGGACATGCCAATCGCCGC
CCAGATCGGGGTAATCCAGCCGAGGGCGGCAAACGGCAACATCAGGCCAT
TGTACAGCCCGGCCCACAGCAGGTTTTCAATGATTACCCGGCGAGTGCGC
CGGGCCAGGGTAAAGGCTTGTACCAGGGCGTCGAGGCGGTTCGACAGCAG
TACCGCGTCGGCACTGGTCTTGGCCAGGTCGGTGGCCGAACCCATAGCCA
CGCTGATATCGGCGGCGACCAGCACCGGCACGTCGTTGACGCCGTCACCG
AGCATCAGCACCTTGCGGCCTTCCATGTGCAACTGTTGCAGCATTTGCAG
CTTGTCGTCGGGGCGCAGGCCGCCGTGTGCTTCGTCGATGCCCAGCTCAA
GGGCGACGCTGGCGACCATTGGCGAACTGTCGCCCGACAGCAGCGAGGTG
CCCCANCCGCGGGCCTTGCAGGGCGGCAACCAAGGCGGGCCGTCGCTGCG
CCAGCGATTTTCCANAACAACCCAGGCCANGGGCGTCCCGGGGATCCCCA
ACAGGAACCATCGCCGGCTCTGTGGGG
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