EY728929

Overview
NameEY728929
Unique NameEY728929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_CENSY (Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum GN=CENSYa_1536 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            G+R A + AA++AL DAGIPMRD+V++C+AG +  T +LD+N  ED AG  D+ VG +P LD+VTL+Q+D  L  + +     +AI+GCK V    ++ L
Sbjct:  135 GSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMPNLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_METTH (Probable exosome complex exonuclease 1 OS=Methanobacterium thermoautotrophicum GN=MTH_683 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            GTR A I AA++AL DAGIPMRD+V +C+AG +    +LDL+  ED  G  DV V ILP   ++TLLQ D  L    FE  + LA+EGC  +    +E L
Sbjct:  135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEAL 234          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_METKA (Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri GN=MK0381 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.004e-16
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I+AA++AL DAGI MRD+V +C+AG +    +LD  Y ED  G  DV + ++P   K+TLLQMD  +    F+  ++LA +GCK V    R  L E
Sbjct:  133 GTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEVO (Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium GN=TV0310 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 554
            GTR A + AAT+AL DAGIPMRD+V  C+AG ++   +LDL+  ED+ G  D+ + I+P   ++ LLQMD  +  + F +   + IE  K ++   R  LL   K
Sbjct:  136 GTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKYK 240          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEAC (Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum GN=Ta1293 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 554
            GTR A + AAT+AL DAG+PMRD+V  C+AG ++   +LDL+  ED+ G  D+ + I+P    + L+QMD  +  +     M +  E  K ++   RE LL   K
Sbjct:  136 GTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREALLNKYK 240          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRCJ (Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  243 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            TR A + AA+LAL DAGI MRD+V   S G ++ T +LDLN +ED+ G  D+ VG +P L + TLLQ+D       F + + LA++G + V    RE L
Sbjct:  134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMPNLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREAL 232          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_HYPBU (Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.100e-14
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 575
            GTR+A I AA+LAL DAGI MRD+V   + G ++   +LD++ +ED+    D+ V + P+LDKV LLQ++  L  + F   ++LA +G + + N  +E L +   ++    G
Sbjct:  143 GTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVEEG 254          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_SULSO (Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus GN=SSO0735 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            G+R   + AA+LAL DAGIPMRD++   + G  +   +LDLN  ED  G  D+ + ++P+L++VTL Q++  +  + F     LA++G   + N  RE L
Sbjct:  137 GSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREAL 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAE (Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum GN=PAE2207 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  243 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            TR A + AA+LAL DAGI MRD+V   S G ++ T +LDLN +ED  G  D+ +G +P L + TLLQ+D     + F   + LA+ G + V    R+ L
Sbjct:  134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMPNLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDAL 232          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRIL (Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  243 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            TR A + AA+LAL DAG+ MRD+V   S G ++   +LDLN +ED  G  D+ VG +P L + TLLQ+D     + F + + LAI+G + V    R+ L
Sbjct:  134 TRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDAL 232          
The following BLAST results are available for this feature:
BLAST of EY728929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ECX1_CENSY2.141e-1846.00Probable exosome complex exonuclease 1 OS=Cenarcha... [more]
ECX1_METTH6.229e-1848.00Probable exosome complex exonuclease 1 OS=Methanob... [more]
ECX1_METKA2.004e-1645.10Probable exosome complex exonuclease 1 OS=Methanop... [more]
ECX1_THEVO1.696e-1540.95Probable exosome complex exonuclease 1 OS=Thermopl... [more]
ECX1_THEAC3.779e-1539.05Probable exosome complex exonuclease 1 OS=Thermopl... [more]
ECX1_PYRCJ8.419e-1544.44Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_HYPBU1.100e-1437.50Probable exosome complex exonuclease 1 OS=Hyperthe... [more]
ECX1_SULSO3.199e-1438.00Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
ECX1_PYRAE4.178e-1442.42Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_PYRIL5.457e-1442.42Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728929 ID=EY728929; Name=EY728929; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGAGCAGATGGAGGTAGCTTATATTTCAATCATAAGTCCCT
ATTGATGATCCCCTAGACGACAAGAACCTCTTATATTATCTCTCTCTCAT
CCTCTGATTCTGTGTGTTTGCTTGACAGTGCATTTGTATACTTCCCTTTT
CTTTTTCCTTTTTTTCTGCCACGACATTGAGTAGTTCATCTTCTGAAATA
GGAAATGTCTCTTGCTGATTTTGTAATGTGTGGTCAACAGGGACAAGATC
CGCATGTATTAATGCCGCAACATTAGCCCTTCAAGATGCTGGTATTCCAA
TGCGCGATATTGTTACTTCATGTAGTGCTGGATACCTCAATAGCACTCCT
CTTCTTGATTTGAATTATGTTGAAGATAGTGCTGGAGGCCCTGATGTCAC
TGTAGGTATTTTACCTACATTGGACAAAGTTACTCTTCTTCAGATGGATG
CCAAGTTACCCACAAATACCTTTGAAGATGTCATGCAACTTGCAATTGAA
GGCTGTAAGGCAGTGGCAAATTACATTCGAGAAGTATTGCTAGAGAATAC
CAAGCAGTTGGAATGCCGCCGGGGTTTATGATAGATAGTCATGGCAAGGT
AGTTGTTCTTTGACTGTTGCCTGACTGGTGTNGTTTGCCCTGNTCATTTT
CTGACTTTGAATTGTACCATCTTTCACATGGAAATGTGAGATCATACAGG
GATTACTGAATGGNCANTGTTACTCAAATCCAACCTGGTCTCTTNAAGCA
TGGTTTGCTTATTCCCAATTTGTTGTGGAAAATTTTATTACACAGATTAT
CCCTTGGGTGTATTGGTCTGGCTACTATTAATTTTGTATGGAGCTCCTGA
AAGCATTACTAATACCTAAGAAAATCTGGTTTCCCATTTCCATTG
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