EY728918

Overview
NameEY728918
Unique NameEY728918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.447e-53
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPL 303
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+ DPS+P  LT FL YKAGMT  +R+V +PG K+ K+E  EAVTI+ETPPL
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPL 84          

HSP 2 Score: 90.5077 bits (223), Expect = 1.447e-53
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  299 PSVVVGVLGYVKTPRGLRSLCTVWAQHLTEEVRRKFYXNWCESXXXXXXXXXXXXETDDGEKDIHAPLEKMKKYCTVIRVLAPTQIRKMKGLKQKKAI*WEIK 607
            P VVVGV+GYV TPRGLRS  T++A+HL++E RR+FY +W +S               DG+K +      MKKYC VIRV+  TQ+ K+   +QKKA   EI+
Sbjct:   83 PLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQ 184          

HSP 3 Score: 40.817 bits (94), Expect = 1.447e-53
Identity = 17/51 (33.33%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  580 EEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            ++ H+M  Q++GG+VA  V +A     KQ+P+ +VF + E++D +   +G+
Sbjct:  176 KKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGR 226          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.882e-53
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPL 303
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+ DPS+P  LT FL YKAGMT  +R+V +PG K+ K+E  EAVTI+ETPPL
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPL 84          

HSP 2 Score: 89.7373 bits (221), Expect = 1.882e-53
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  299 PSVVVGVLGYVKTPRGLRSLCTVWAQHLTEEVRRKFYXNWCESXXXXXXXXXXXXETDDGEKDIHAPLEKMKKYCTVIRVLAPTQIRKMKGLKQKKAI*WEIK 607
            P VVVGV+GYV TPRGLRS  T++A+HL++E RR+FY +W +S               DG+K +      MKKYC VIRV+  TQ+ K+   +QKKA   E++
Sbjct:   83 PLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQ 184          

HSP 3 Score: 41.2022 bits (95), Expect = 1.882e-53
Identity = 17/51 (33.33%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  580 EEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            ++ H+M  Q++GG+VA  V +A     KQ+P+ +VF ++E++D +   +G+
Sbjct:  176 KKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGR 226          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.012e-49
Identity = 119/247 (48.18%), Postives = 145/247 (58.70%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**WRE-----------RHSCSAGENEEILHRDS---------CFGPYPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK FPK D SKPC LT F+ YKAGMT IVR+VEKPGSKLHKKETCEAVTIIETPPL    G      TP    SL+ V  A H             + EE R   YK      W +           ++   AG+ E  +  +                 +K +G + ++ HLM  Q++GG++A  VD+ Y FF K+IP+DAVF KDEM+D +   +GK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPL-VIVGLVAYVKTPRGLRSLNSVW-AQH-------------LSEEVRRRFYKN-----WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 194.897 bits (494), Expect = 5.138e-49
Identity = 120/248 (48.39%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**W-----------RERHSCSAGENEEILHRDSCFGPYPD----------QKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            MSHRKFEHPRHGSLGFLPRKRASRHRGKVK FPK DP+KPCRLT FL YKAGMT IVRDVEKPGSKLHKKETCEAVTIIETPP+    G      TP    SL C   A H             + EE R   YK      W            ++H    G+ ++I  +      Y            +K +G + ++ HL   Q++GG +A  VD+A   F KQ+P+DA+F KDEM+D +   +GK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPM-VVVGVVGYVKTPRGLRSL-CTVWAQH-------------LSEELRRRFYKN-----WAKSKKKAFTRYSKKHETEEGK-KDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 192.971 bits (489), Expect = 1.952e-48
Identity = 117/247 (47.37%), Postives = 143/247 (57.89%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**W-RERHSCSAGENEEILHRDSCFGPYPD-------------------QKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVK FPK D +KPC+ T F+ YKAGMT IVR+VEKPGSKLHKKETCEAVTIIETP +    G      TP    SL+ V  A H             + EE R   YK      W + +     G  ++    D   G                       +K +G + ++ H+M  Q++GG++A  VDFAY FF KQIPI+AVF KDEM+D +   +GK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAM-VVVGVVAYVKTPRGLRSLNTVW-AQH-------------LSEEVRRRFYKN-----WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.402e-38
Identity = 101/228 (44.30%), Postives = 132/228 (57.89%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**WRERHSCSAGENEEILHRDSCFG--PYPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQG 729
            MSHRK+E PRHGSL FLPRKRA+RHRGKVK FPK DP KP  LT  + YKAGMT +VRD+++PG+K+HKKE  EAVTIIETPPL    G     +TP    SL  V  A H    ++V +   +   + +   + +       E  +    E E I    +      +   +    + ++ HLM  QV+GGSVA  VDFA   F K I ID++F KDEM+D +   +G
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAV-GVVGYIETPRGLRSLTTVW-AEHLS--DEVKRRFYKNWYKSKKKAFTKYAKKHAEENGASITRELERIKKYCTVVRVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKG 224          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.895e-35
Identity = 100/243 (41.15%), Postives = 137/243 (56.38%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPP--LGGCWGPWLCQDTP---------WAS-FSLHCVGS--ASH*GG*EKVLQXLVR--IEEEGRH*VYKEV*N**WRERHSCSAGENEEILHRDSCFGPYPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQGK 732
            MSHRKF  PRHGS+GF P+KR+ RHRGKVK FPK DP+KP  LT F+ +KAGMT IVR+V+KPGSK++KKE  EAVTI E PP  + G  G     DTP         WA   S  C G    +     +K  Q   +   +E+GR  +  ++     + +  CS  +   I H       + ++K         H+M  Q++GG+VA  VD+A     KQ+P+D+VF +DEM+D +   +GK
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVG---YIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADL----NKMKKYCS--KIRVIAHTQMKVMKHREKK--------AHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGK 226          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.774e-33
Identity = 92/232 (39.66%), Postives = 130/232 (56.03%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**WRERHSCSAGENEEILHRDSCFG------PYPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQG 729
            MSHRK+E PRHGSLGFLPRKR++  RG+VK FPK   SKP  LT FL YKAGMT +VRD+++PGSK+HK+E  EA T+++TPPL    G     +TP    SL  V  A H    E+V +   +   + +   + +     +  +++    + E  L R   +        +   K      ++ HL   QV+GGSV+  VD+A   F K + +D+VF KDEM+D     +G
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPL-VVVGVVGYVETPRGLRSLTTVW-AEHLS--EEVRRRFYKNWYKSKKKAFTK-----YSAKYAQDGAQVERELARIKKYASVVRVLAHTQIKKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKG 223          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.805e-33
Identity = 89/232 (38.36%), Postives = 132/232 (56.90%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPPLGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N**WRERHSCSAGENEEILHRDSCFGP------YPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMDFLV*AQG 729
            MSHRK+E PRHG LGFLPRKRA+  RG+VK FPK D SKP  LT FL YKAGMT IVRD+++PGSK HK+E  EAVT+++TPP+    G     +TP    SL  V  A H    ++V +   +   + +   + +     +  +++ +  E E  L R   +        +   +      ++ HL   Q++GGS++  VD+A   F K + +D+VF ++EM+D +   +G
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPV-VVVGVVGYVETPRGLRSLTTVW-AEHLS--DEVKRRFYKNWYKSKKKAFTK-----YSAKYAQNGAEIERELARIKKYATVVRVLVHTQVRKTPLVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKG 223          
BLAST of EY728918 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.562e-32
Identity = 91/235 (38.72%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKGFPKGDPSKPCRLTGFLRYKAGMTPIVRDVEKPGSKLHKKETCEAVTIIETPP--LGGCWGPWLCQDTPWASFSLHCVGSASH*GG*EKVLQXLVRIEEEGRH*VYKEV*N----------**WRERHSCSAGENEEILHRDSCFG----PYPDQKNEGTEAEEGHLMGDQVHGGSVAHNVDFAYGFFXKQIPIDAVFPKDEMMD 708
            MSHRKF  PRHG +GF P+KR+  +RG++K FPK D SKP  LT FL YKAGMT IVRDV+KPGSK++KKE  EAVTI+ETPP  + G  G     DTP    +L  +  A H             + EE R   Y                 W++       E +    +  C       +   K      ++ HL+  QV+GG++   VD+A     KQ+ +D VF +DEM+D
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTG---YVDTPQGPRALTTIW-AEH-------------LSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMID 218          
The following BLAST results are available for this feature:
BLAST of EY728918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL3L_HUMAN1.447e-5366.6760S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN1.882e-5366.6760S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ORYSJ3.012e-4948.1860S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH5.138e-4948.3960S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH1.952e-4847.3760S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ASPFU1.402e-3844.3060S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_TOXCA1.895e-3541.1560S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_DEBHA1.774e-3339.6660S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_CANGA8.805e-3338.3660S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_CAEEL2.562e-3238.7260S ribosomal protein L3 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-D01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728918 ID=EY728918; Name=EY728918; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGCCGAGTAG
GATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTC
TTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGGCTTTCCC
AAGGGTGACCCATCCAAACCATGCAGATTAACTGGTTTTTTAAGGTACAA
AGCTGGAATGACCCCTATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGC
TGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCC
CTCGGTGGTTGTTGGGGTCCTTGGTTATGTCAAGACACCCCGTGGGCTTC
GTTCTCTCTGCACTGTGTGGGCTCAGCATCTCACTGAGGAGGTTAGGAGA
AAGTTTTACAANAACTGGTGCGAATCGAAGAAGAAGGCCGTCACTAAGTA
TACAAAGAAGTATGAAACTGATGATGGAGAGAAAGACATTCATGCTCCGC
TGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCCTACC
CAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCATCTGATGGGA
GATCAAGTCCATGGTGGATCAGTTGCCCACAACGTTGACTTTGCTTATGG
TTTCTTCCANAAACAAATTCCTATTGATGCTGTGTTCCCGAAAGATGAGA
TGATGGACTTCTTGGTGTGAGCCCAGGGTAAGGATTTGGNGGGTGTGGTT
CCCCTTGGGGGGGTTCTCGTCTCCGCCGTAGGACCCTCGGGGTCTCGGCA
GGGTGGCGGCATTGGTGCCTGTCATCCCCCAAGGCTCCGCGGGGTGTTGT
AGGACGGGGGAGACGGGGTCCTTCGCGCGCTGCG
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