EY728906

Overview
NameEY728906
Unique NameEY728906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728906 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 64/223 (28.70%), Postives = 96/223 (43.05%), Query Frame = 2
Query:   89 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS---YFNLVLITNVGGAGDVRAVSI-KGSRTKWQPMSRNWGP--KLASNSYLNGQSLSFVVTTSYGHSVVSYNVAPPKWS 703
            W  A AT+Y               G  N     + + T+  +  +F +G  CG+C+QI C N P  C     ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + ++RV C   G  + F +   S   YF  VL+    G GDV  V + + +   W PM  +WG   +L SN  L     S  +T   G  +V+  V P  W+
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTA-PFSLRITNESGKQLVASQVIPANWA 255          
BLAST of EY728906 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 61/219 (27.85%), Postives = 99/219 (45.21%), Query Frame = 2
Query:   89 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNG-GIRFTINGHSY---FNLVLITNVGGAGDVRAVSIKGSRTK-WQPMSRNWGPKLASNSYLNGQ-SLSFVVTTSYG-HSVVSYNVAPPKWSFGQTY 718
            ++N+ AT+Y              YG           + +S  L+NNG  CGAC+Q+ C   P  C    + V AT+     G  +   P  +  +++P  ++   Y  G+V V Y+R+ C+  G  + + I+  SY   +  +L+  VGG  D+ AV +     K W+ M R +G      +   G  +L F+V  S G + + S N  P  W+ G TY
Sbjct:   27 FVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPH-CSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTEN-QLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATY 243          
BLAST of EY728906 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 58/222 (26.13%), Postives = 98/222 (44.14%), Query Frame = 2
Query:   89 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA-------QYRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSI-KGSRTKWQPMSRNWGP--KLASNSYLNGQSLSFVVTTSYGHSVVSYNVAPPKW 700
            W+ A AT+Y               G  N+    Y    +  +  +F +G  CG+C+++ C   P  C +   ++ +T  N+ P   +      HFD S   F  +A         +AGI+ + +RRVRCK  GG + T +     +  +  VL+  V   GDV  + + +     W+PM  +WG   ++ + + L     S  VTT  G S+++ +V P  W
Sbjct:   43 WLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPISAY------HFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKA-PFSIRVTTESGKSLIAKDVIPVNW 256          
BLAST of EY728906 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 61/234 (26.07%), Postives = 102/234 (43.59%), Query Frame = 2
Query:   80 YGG-WINAHATFYXXXXXXXXXXXXXX---YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSIK-GSRTKWQPMSRNWGP--KLASNSYLNGQSLSFVVTTSYGHSVVSYNVAPPKWSFGQTYTGR 727
            YG  W+ A ATFY                 Y ++    +   TA  +  +F +GL C AC++I C  +P  C    ++V  T+      +     +HFDLS   F  +A+        +AG + + +RRV+CK   G + T +     + ++  +L+    G G++ AV IK     ++ PM  +WG   ++     L G   S  +T+  G  +V  +V P  W     YT +
Sbjct:   14 YGSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITD----KNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKG-PFSIRLTSEGGAHLVQDDVIPANWKPDTVYTSK 241          
BLAST of EY728906 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 59/230 (25.65%), Postives = 96/230 (41.74%), Query Frame = 2
Query:   68 SVQGYGGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG---GIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT---KWQPMSRNWGP--KLASNSYLNGQSLSFVVTTSYGHSVVSYNVAPPKWS 703
            ++ G   W NA AT+Y               G   +    +   T+  +  L+  G  CG+C+++ C  +P       ++ +T  N+ P         +HFDLS   F  +A+        RAGI+ V + RV C+  G   G          +  VL+    G GDV  V +K +     +W PM  +WG   +L SN  L     S  + +  G ++V+ +V P  W+
Sbjct:   41 AIGGAAAWGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLS------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
The following BLAST results are available for this feature:
BLAST of EY728906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
EXPB3_ORYSJ3.846e-1228.70Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLB1_ARATH3.846e-1227.85Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB9_ORYSJ1.461e-1126.13Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAC1_CYNDA3.256e-1126.07Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXPB8_ORYSJ4.252e-1125.65Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728906 ID=EY728906; Name=EY728906; organism=Citrus sinensis; type=EST; length=883bp
CACGCGTCCGGAAAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGT
TTCTCTCATTGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCT
CATGCAACTTTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGC
TTGTGGGTACGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAG
CACTTAGCACTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTT
CAAATTATGTGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCAT
TGTCACTGCCACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTA
ACCACCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTAT
AGAGCTGGTATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAA
TGGGGGCATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTAGTTC
TAATAACAAACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCATCAAA
GGTTCAAGGACTAAATGGCAACCGATGTCGAGAAACTGGGGCCCAAAACT
GGCAAGCAACTCGTATCTTAATGGACAAAGCCTCTCTTTTGTTGTGACCA
CAAGTTATGGCCACAGTGTTGTTTCTTACAATGTTGCCCCTCCTAAGTGG
TCATTTGGGCAGACTTATACCGGCAGACAATTCGATATTAGGCTTATTTA
AGTTAAAATCAGCAACCCTTTTAGTATTTTAATTAGCTCTAGCGATATGG
GTGCGTACAAATAATTCTGAATTGGCCCTATGTGCTTTATACCTTTTGAA
AGTGTTGCTGCGTTTTCATCTTTACTGAATGTG
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