EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THEYD (Glucose-1-phosphate adenylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.017e-19
Identity = 64/197 (32.49%), Postives = 108/197 (54.82%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD---------------GYWEDIGTIEAFYNANLG-ITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVI 577
            ++I+ H E +A +TVAA P+  K A++FG++  D + RI  F EKPK             + + D    +M Y+ SMG Y+ + D++++ L+R +    +DFG+ VIP    +G + + Y YD               GYW D+GTI A+++A++  + +KPI  F  Y++  PI+      PP K+LD ++ +S+I
Sbjct:  134 QMIKFHIENNAHVTVAARPVALKHASSFGVIITDPDHRIAGFQEKPKDP-----------IPMPDN--PDMAYV-SMGNYIFNADILIDALVRAEKKKQHDFGAHVIPDL--VGRKCKVYAYDFAKNEIPGIKSYEERGYWRDVGTISAYFDAHMDMLGEKPI--FEIYNKMWPIHPARYEGPPVKILDGEIKNSII 312          

HSP 2 Score: 21.1718 bits (43), Expect = 2.017e-19
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+YRMD  ++ +
Sbjct:  125 DHIYRMDIRQMIK 137          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.621e-19
Identity = 60/186 (32.26%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLYDG----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            I+  H E  AD+T+A L +  + A+AFG+M +D+  R   F+EKP+            I G      K    + SMGIYV +   +   L    D    ++DFG +VIP   +   RV A+ +            YW D+GT++A++ AN+ +T    PD + YD   PI+T    LPP+K +  D
Sbjct:  155 ILAEHVERQADLTIACLEVPVEDASAFGVMAVDDSWRTTSFAEKPEH--------PAPIPG------KPGHALISMGIYVFNAKFLYEQLIQDHDMDQSSHDFGKDVIPRLVASNARVYAHRFQNSCVNMASGVPYWRDVGTVDAYWKANIDLT-TITPDLNLYDEDWPIWTHQEQLPPAKFVFDD 325          

HSP 2 Score: 24.2534 bits (51), Expect = 2.621e-19
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+MDY R L  H E+
Sbjct:  145 DHIYKMDYGRILAEHVER 162          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.622e-19
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLYDG------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            +++  H E+ AD+T+  + +    AT FG+M +DE  +I +F+EKP        K D                +ASMGIYV S + +   L    D    + DFG ++IP       +V+A+ ++       YW D+GTIE+++ A+L +     PD + YD   PI+T    +PP+K +  D
Sbjct:  147 KMLYEHAESGADVTIGCIEVPRMEATGFGVMSVDECFKITKFTEKPANPDAMPHKPDKA--------------LASMGIYVFSTEFLFQKLIEDADNPNSSRDFGKDIIPSIIE-DWQVRAFPFEDETGLPVYWRDVGTIESYWKASLDLC-SITPDLNLYDEDWPIWTYQAQMPPAKFIFDD 313          

HSP 2 Score: 23.8682 bits (50), Expect = 2.622e-19
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTE 59
            DH+Y MDY + L+ H E
Sbjct:  138 DHIYSMDYSKMLYEHAE 154          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORK4 (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.924e-19
Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVTDSVI 577
            ++++ H E+ A  +VA + +  K ATAFG ++ D++G I EF EKP          D T               ASMG YV +   +++ L++       A+D G  +IP   + G   +A+++D              GYW D+GT++AFY A++ +     P F+ Y+R  PI+T     LPP+K +   +  S I
Sbjct:  136 QMVKEHIESGAACSVAGIRVPRKEATAFGCIQADDDGTITEFLEKPADPPATPDDPDVT--------------FASMGNYVFTTQALIDALKEDSEDENSAHDMGGNIIPYFVNRG---EAHVHDFSRNVVPGETDRDHGYWRDVGTVDAFYEAHMDLI-SVYPVFNLYNRKWPIHTSDDSNLPPAKFVKGGIAQSSI 315          

HSP 2 Score: 27.335 bits (59), Expect = 2.924e-19
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC+I    + +SV+G    + EGA +E  +LM
Sbjct:  319 GCIISAGTVRNSVLGPGVVVEEGASVEGCVLM 350          

HSP 3 Score: 21.557 bits (44), Expect = 2.924e-19
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+YRMD E++ +
Sbjct:  127 DHVYRMDPEQMVK 139          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THECA (Glucose-1-phosphate adenylyltransferase OS=Thermus caldophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.358e-19
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL----RDKFPGANDFGSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++ H +T ADIT+AA P+    AT FG++++DEE RI EF EKP+  +    + D                +ASMG Y+   + +  LL    RD+   A+DFG  VIP A  +G RV AY +           + YW D+GT++A+Y A++ + K   P F       P+ T   + PP+K +
Sbjct:  141 MVEYHYDTRADITIAAYPVPVAEATRFGVLQVDEEWRITEFQEKPEEPKPIPGRPDMA--------------LASMGNYIFRTEALFELLEADARDE-TSAHDFGKGVIPRAIRVGYRVYAYDFHRNPIPGQEGPNLYWRDVGTLDAYYEASMDLVKVD-PVFGLCSPVWPLRTANLFSPPAKFV 309          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_GRABC (Glucose-1-phosphate adenylyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgC PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.411e-19
Identity = 56/187 (29.95%), Postives = 86/187 (45.99%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYD----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADV 562
            ++  H E  AD+TV  + +  + AT FG+M++D+ GRI  F EKP        + D                +ASMGIYV     + ++LR         +DFG ++IP     G  +     D           YW D+GT+++++ ANL +T   +P    YD   PI+T     PP+K +  DV
Sbjct:  143 MLHQHVERQADVTVGCIEVPREEATGFGVMQVDDTGRITAFLEKPSDPPGMPGQPDIA--------------LASMGIYVFKTKFLFDVLRRDAADPDSKHDFGGDIIPDLVENGTAIAHRFSDSCVRSSKTAEAYWRDVGTLDSYWQANLDLT-NVVPTLDLYDSGWPIWTYNEISPPAKFVYDDV 314          

HSP 2 Score: 25.409 bits (54), Expect = 3.411e-19
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   12 DHLYRMDYE-RLFRHTEK 62
            DH+Y+MDYE  L +H E+
Sbjct:  133 DHIYKMDYEIMLHQHVER 150          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBCH (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio cholerae GN=glgC2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-19
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLY---------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA 556
            +++ H   +A +T+A + +    A+AFG+M ID++ RI  F EKP        + D +              +ASMGIY+ + DV+   L +       ++DFG +VIP   + G  V AY +         D YW D+GTI++FY+AN+ +  +P+P  + Y ++  I T  +  PP++ + +
Sbjct:  135 MLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCFVEKPADPPCIPNRPDHS--------------LASMGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIATG-SVFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLL-QPVPPMNLYQKNWAIRTYEQQYPPARTVSS 302          

HSP 2 Score: 25.0238 bits (53), Expect = 3.790e-19
Identity = 10/44 (22.73%), Postives = 22/44 (50.00%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*DGC 707
            +  G +     + HS++     I++ A+I D++L     + +GC
Sbjct:  315 IANGVINSGGSVQHSIISSNVRINDSALIVDSILFDDVEVGEGC 358          

HSP 3 Score: 22.3274 bits (46), Expect = 3.790e-19
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:   12 DHLYRMDY 35
            DH+YRMDY
Sbjct:  125 DHIYRMDY 132          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_FRAP2 (Glucose-1-phosphate adenylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.434e-19
Identity = 58/183 (31.69%), Postives = 93/183 (50.82%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++ H ++    TV  + + E+ A AFG+M IDE+ +I  F EKPK       K   TI G  D         ASMGIY+ + D + +LL +       ++DFG ++IP   S    +          +    + YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +
Sbjct:  146 MLRDHAQSGYKCTVGCVEIAEEEAYAFGIMGIDEDRKITSFIEKPK-------KNAPTIPGTTDR------CYASMGIYIFNSDYLYDLLEEDIANKESSHDFGKDIIPRVVSENQALAHPFSMSCVPRGEGIEPYWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFV 314          

HSP 2 Score: 22.7126 bits (47), Expect = 4.434e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDY  + R
Sbjct:  136 DHIYKMDYSVMLR 148          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHIRD (Glucose-1-phosphate adenylyltransferase OS=Rhizobium radiobacter GN=glgC PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.435e-19
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            ++Q H ++ AD+T+  L +    AT FG+M ++E+  II+F EKP               G+      E   +ASMGIYV     ++  +R        + DFG ++IP     G  V            + ++ YW D+GTI+A++ AN+ +T   +PD   YD+S PI+T     PP+K +  D
Sbjct:  145 MLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-----------GIP---GNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT-DVVPDLDIYDKSWPIWTYAEITPPAKFVHDD 315          

HSP 2 Score: 23.483 bits (49), Expect = 4.435e-19
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDYE + +
Sbjct:  135 DHIYKMDYEYMLQ 147          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.901e-19
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL--RDKFPGAN-DFGSEVIPGATS----------IGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A+ TVA LP+  + A+AFG+M +D++ RI++F+EKP          D                +ASMGIYV + D +  LL      P +N DFG ++IP   S          +         + YW D+GT+EA++ ANL +     P+   YDR  PI +    LPP+K +
Sbjct:  156 HVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNPTPMPDNPDMA--------------LASMGIYVFNADYLYQLLDADHNTPDSNHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDENQYWRDVGTLEAYWRANLDLA-SVTPELDVYDRHWPIRSAIESLPPAKFV 319          

HSP 2 Score: 26.1794 bits (56), Expect = 4.901e-19
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+MDY R L  H EK
Sbjct:  142 DHIYKMDYSRMLIDHVEK 159          

HSP 3 Score: 21.9422 bits (45), Expect = 4.901e-19
Identity = 8/32 (25.00%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC++    + HSV+  R  ++    I+ T+++
Sbjct:  337 GCIVSGSVVTHSVLFPRVRVNSFCSIDSTVIL 368          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_THEYD2.017e-1932.49Glucose-1-phosphate adenylyltransferase OS=Thermod... [more]
GLGC_NITEU2.621e-1932.26Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_THICR2.622e-1930.60Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_CORK42.924e-1929.80Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_THECA3.358e-1933.51Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]
GLGC_GRABC3.411e-1929.95Glucose-1-phosphate adenylyltransferase OS=Granuli... [more]
GLGC2_VIBCH3.790e-1929.89Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_FRAP24.434e-1931.69Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_RHIRD4.435e-1930.65Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_PECCP4.901e-1932.96Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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