EY728816

Overview
NameEY728816
Unique NameEY728816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728816 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 2
Query:   26 RYAVVTGANKGIGYEVVRQLALNGIITVLTARDEKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKL 499
            + A+VTGA++GIG  +   L   G   + TA  E G     + L  +G   +    L+V DPA+I SV + IR+ FG++DILVNNAGIT      D L            M    +     ++TN     R+ +A++  +      RI+ + S +G +
Sbjct:    6 KIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGKGLM----LNVTDPASIESVLENIRAEFGEVDILVNNAGIT-----RDNL-----------LMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTM 143          
BLAST of EY728816 vs. ExPASy Swiss-Prot
Match: DRS7B_RAT (Dehydrogenase/reductase SDR family member 7B OS=Rattus norvegicus GN=Dhrs7b PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 52/162 (32.10%), Postives = 72/162 (44.44%), Query Frame = 2
Query:   35 VVTGANKGIGYEVVRQLALNGIITVLTARDEKGGLEAVEKLKHSGFDNVIFHQ-----LDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKLMV 505
            VVTGA  G+G E  R     G   VL  R+ K   E   +L  S       HQ      D+ADP AI   A  I   FG +DIL+NNAGI+   + +DT+                 +   K ++ NY G   + +AL+P +       IV +SS  GK+ +
Sbjct:   56 VVTGATSGLGKECARVFHAAGAKVVLCGRNVKALEEFTRELADSSSSQGQTHQPCVVTFDLADPGAIAPAAAEILQCFGYVDILINNAGISYRGAISDTI----------------VDVDRKVMEINYFGPVALTKALLPSMVERKRGHIVAISSIQGKISI 201          
BLAST of EY728816 vs. ExPASy Swiss-Prot
Match: DHR13_MOUSE (Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 50/155 (32.26%), Postives = 75/155 (48.39%), Query Frame = 2
Query:   26 RYAVVTGANKGIGYEVVRQLALNGIITVLTARD-EKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSS 487
            R  VVTGAN GIG     +LA  G   VL  R  E+G   A +  + SG + VIF  LD+A  A++ + A    S   +LD+L++NAGI+                       +T E+    L+ N++G   +   L+P L+    +R+V VSS+
Sbjct:   37 RTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSCG--------------------RTRETFNLLLRVNHVGPFLLTHLLLPRLRSCAPSRVVIVSSA 171          
The following BLAST results are available for this feature:
BLAST of EY728816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FABG_SALTI9.153e-1131.013-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
DRS7B_RAT9.153e-1132.10Dehydrogenase/reductase SDR family member 7B OS=Ra... [more]
DHR13_MOUSE9.153e-1132.26Dehydrogenase/reductase SDR family member 13 OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-A04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728816 ID=EY728816; Name=EY728816; organism=Citrus sinensis; type=EST; length=866bp
CACGCGTCCGCTATATTCTATATTCAGGTATGCAGTTGTTACAGGAGCAA
ATAAGGGAATTGGGTATGAAGTAGTGAGGCAATTGGCTTTAAATGGGATC
ATTACGGTACTAACAGCCAGAGATGAGAAGGGGGGTCTTGAAGCTGTTGA
AAAACTCAAACACTCTGGCTTTGATAATGTGATCTTTCATCAGCTTGATG
TTGCAGACCCTGCTGCTATTCACTCTGTAGCTGATTTCATTCGAAGTCAT
TTTGGAAAGCTTGATATTTTGGTAAATAATGCAGGGATTACTGGAATCAG
TTCGGATGCTGATACTTTGTCAGGTTTTATTGAGGAAGGTGTTGCAAGAG
GAAAAATGACTCAAACTTATGAGTCAGCTGAAAAGTGCCTGCAAACAAAC
TACTTGGGGGCCAAAAGAATGTGTGAAGCACTCATTCCTCTCCTCCAGTT
ATCCGATTCAGCAAGAATTGTTAATGTATCCTCTTCCTTGGGAAAGTTGA
TGGTAAAACAGTTTTACAGCCCTTTATAAAATAGACCTAGCTGACATTCA
GGTAGTAATTAAGCCCAATTTGGCCGCTAAATTTTGCTTCCACTGCATCT
GATATTCCCTTATAATTACCTGTAAATCGATATTGGAGTACTCCTTGTCT
CAAATTTTAATTATGATTAAGTTCATTGGAATCATGAAGGTTGAAATTTC
TGTNTCTCATCATTTTCTTTCAGTATGTAACACATGAATGGGCCAAAGGA
GTGTTTATTGATGCTGAAAACTCACAGAAGAAAAGTGGATGAGGTATTGA
CCAGTATCTAATTAATTTCAAAAGGGTCCCCGGACTCAAAGATGGCTGCT
ATCCCACTGCTTATTA
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