EY728785

Overview
NameEY728785
Unique NameEY728785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 245
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 245
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 245
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 245
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 245
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 290
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of EY728785 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 3
Query:   24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 290
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of EY728785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN6.019e-1554.05Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA6.019e-1554.05Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB6.019e-1554.05Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE6.019e-1554.05Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK6.019e-1554.05Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN2.287e-1446.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE8.691e-1444.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728785 ID=EY728785; Name=EY728785; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAG
AGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAA
TGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGG
TTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGT
AGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGG
AGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCC
AGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCC
CAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCT
TGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAA
CAAGAGTACGTTTGCTTCAACAGTTACCACATTATCCTTATTCATATTTA
AACTTTCACTACTTTGGATCATAATGAGAAGTTTGCTAGCTTCATCTGCA
TATATAGTGGATATGCTACTCTAGATGCATGTNTTCATTTTGAAAGTTTA
AAGTACATTACTCTTTTAACACACATGTTGTAAAGAATGTGTTAACTAAG
TGGTTATTCAATCACATCAGATTAGAACTTTGTNTAATATTTCTGCCTTG
CTTATATATTCTGAATTCAAGAAGAAAGGAGGGTGTGTTTGTGAACTANT
GGGAGACAAATCACATGTTATCAGTTATTTTAAAATCTATGACANAGTGA
TATACATTTGCTGTTGAATCACAATNATAGCTGGAGCCCGATCTGGAGTA
ATCCTAGT
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